Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Stark, R. A., Brinkman, B., Gibb, R. L. et al. 2023. Atypical play experiences in the juvenile period has an impact on the development of the medial prefrontal cortex in both male and female rats. Behavioural Brain Research 439, 114222.

In rats reared without play, or with limited access to play during the juvenile period, the dendrites of pyramidal neurons of the medial prefrontal cortex (mPFC) exhibit more branching than rats reared with more typical...

Xu, J. J., Lucero, M. Y., Herndon, N. L. et al. 2023. Comparison of a minimally invasive transthoracic approach and a surgical method for intrapleural injection of tumor cells in mice. Comparative Medicine 73(2), 120–126.

Intrapleural injections can be used in mice to deliver therapeutic and diagnostic agents and to model human disease processes (for example, pleural fluid accumulation, malignant pleural disease, and lung cancers). In the context of establishing...

Chakravarty, S., Donoghue, J., Waite, A. S. et al. 2023. Closed-loop control of anesthetic state in nonhuman primates. PNAS Nexus 2(10), 293.

Research in human volunteers and surgical patients has shown that unconsciousness under general anesthesia can be reliably tracked using real-time electroencephalogram processing. Hence, a closed-loop anesthesia delivery (CLAD) system that maintains precisely specified levels of...

Alvarado, M. V., Felip, A., Espigares, F. et al. 2023. Unexpected appetitive events promote positive affective state in juvenile European sea bass. Scientific Reports 13(1), 22064.

Some animal species exhibit considerable physiological and behavioural alterations in response to captivity. It has been hypothesized, but rarely tested, that such changes reflect a negative affective state that is associated to this specific context...

Alvarez-Hernandez, N., Vallejo-Timarán, D., de Jesús Rodriguez, B. 2023. Adapted original music as an environmental enrichment in an intensive pig production system reduced aggression in weaned pigs during regrouping. Animals 13(23), 3599.

In intensive swine production systems,, the practice of regrouping unfamiliar pigs is common, often leading to aggressive behavior. Although the effect of different musical genres composed for humans has been evaluated in pigs to mitigate...

Anderson, M. G., Johnson, A. M., Jacobs, L. et al. 2023. Influence of perch-provision timing on anxiety and fearfulness in laying hens. Animals 13(19), 3003.

Perches can enhance laying hen welfare, but their effectiveness might be age-dependent. We investigated early and late perch access effects on anxiety and fear in pullets through attention bias (AB) and tonic immobility (TI) tests...

Andrade, M. P., Santos, C. M. D., De Paiva, M. M. M. et al. 2023. Assessing negative welfare measures for wild invertebrates: The case for octopuses. Animals 13(19), 3021.

Welfare metrics have been established for octopuses in the laboratory, but not for octopuses living in the wild. Wild octopuses are constantly exposed to potentially harmful situations, and the ability to assess the welfare status...

Ataallahi, M., Cheon, S. N., Park, G.-W. et al. 2023. Assessment of stress levels in lactating cattle: Analyzing cortisol residues in commercial milk products in relation to the temperature-humidity index. Animals 13(15), 2407.

Chronic stress in the dairy cattle industry has negative impacts on animal health, productivity, and welfare. It has been confirmed that cortisol transfers to milk and resists the high temperature during milk processing. This study...

Babitz, M., Gibson, A., Pratte, J. 2023. Improving animal wellbeing using behavior-based methodologies: A discussion on enrichment and bears under human care. Journal of Zoological and Botanical Gardens 4(1), 256–276.

This communication discusses the Bear Care Group’s “behavior-based” enrichment philosophy, focusing on the importance of enrichment programs built on the knowledge of species’ natural histories, living strategies, and observed daily and seasonal routines. Methods for...

Bakony, M., Kovács, L., Kézér, L. F. et al. 2023. The use of body surface temperatures in assessing thermal status of hutch-reared dairy calves in shaded and unshaded conditions. Frontiers in Veterinary Science 10.

The study was carried out in a Hungarian large-scale dairy farm during a 5-day period in hot August weather. Altogether 16 preweaning calves were chosen for the study. An agricultural mesh with 80% shielding was...

Baskir, E., Parsons, A., Elden, M. et al. 2023. Quantifying acute behavioral reactions of Bali mynas (Leucopsar rothschildi) to environmental and progressively challenging enrichment. Journal of Zoological and Botanical Gardens 4(1), 176–190.

Animals use specific behaviors and skills to overcome challenges and access resources. Environmental enrichment is provided to animals in human care to both promote species-appropriate behaviors and reduce undesired behaviors. Feather pecking in birds is...

Becker, L., Mallien, A. S., Pfeiffer, N. et al. 2023. Evidence-based severity assessment of the forced swim test in the rat. PLOS ONE 18(10), e0292816.

The forced swim test (FST) is a traditional assay, which has been used for more than 40 years to assess antidepressant effects of novel drug candidates. In recent years, a debate about the test has...

Beer, H. N., Karr, L. K., Shrader, T. C. et al. 2023. Allostatic load index effectively measures chronic stress status in zoo-housed giraffes. Journal of Zoological and Botanical Gardens 4(3), 623–636.

For giraffes, few standardized methods exist for quantifying chronic stress. Allostatic load index is quantified from a panel of multi-system stress biomarkers to estimate cumulative stress. Our objective was to determine whether a panel of...

Bertrand, D. A., Berman, C. M., Heistermann, M. et al. 2023. Effects of tourist and researcher presence on fecal glucocorticoid metabolite levels in wild, habituated Sulawesi crested macaques (Macaca nigra). Animals 13(18), 2842.

Ecotourism managers and researchers often assume that apparently habituated primate groups no longer experience adverse consequences of prolonged exposure to tourists or researchers. We examined the effects of tourists and researchers on fecal glucocorticoid metabolite...

Bini de Lima, A. C., Sebastião da Fé, V. C., Palermo Hernandes, M. S. et al. 2023. Olfactory stimulation as environmental enrichment for domestic horses—A review. Animals 13(20), 3180

Horses constantly face several challenges inherent to the domestic environment, and it is common for the expression of their natural behavior to be drastically limited. Environmental enrichment has been suggested as an alternative to improve...

Bissell, H., Alves, M. H., Yogui, D. R. et al. 2023. Comparison of estimated wild giant anteater (Myrmecopahaga tridactyla linnaeus, 1758) diets with commercial diets for insectivores: Implications for anteater health. Animals 13(23), 3606.

Using the stomach contents of 24 wild road-killed giant anteaters as proxies for their diet, we found that estimated wild diets were much lower in calcium (about ten times less) and phosphorus compared with manufactured...

Bogdan, R., Kayumova, R., Schwarting, R. K. W. et al. 2023. Wildtype peers rescue social play and 50-kHz ultrasonic vocalization deficits in juvenile female Cacna1c heterozygous rats. Frontiers in Behavioral Neuroscience 17.

Healthy brain development depends on early social practices and experiences. The risk gene CACNA1C is implicated in numerous neuropsychiatric disorders, in which key characteristics include deficits in social functioning and communication. Recently, we reported sex-dependent...

Bohn, L., Bierbaum, L., Kästner, N. et al. 2023. Structural enrichment for laboratory mice: Exploring the effects of novelty and complexity. Frontiers in Veterinary Science 10.

Providing structural enrichment is a widespread refinement method for laboratory rodents and other animals in captivity. So far, animal welfare research has mostly focused on the effect of increased complexity either by accumulating or combining...

Bombal, E., Manteca, X., Tallo-Parra, O. 2023. A protocol to assess the welfare of Patagonian huemul (Hippocamelus bisulcus) in conservation centers. Animals 13(15), 2495.

Animal-welfare-assessment protocols are important for identifying welfare problems in conservation programs. This study aimed to develop a baseline welfare protocol for the assessment of the welfare of Patagonian huemuls (Hippocamelus bisulcus) in conservation centers. This...

Bortoletti, M., Fonsatti, E., Leva, F. et al. 2023. Influence of transportation on stress response and cellular oxidative stress markers in juvenile meagre (Argyrosomus regius). Animals 13(20), 3288.

In aquaculture, the transportation of live fish is a crucial but stress-inducing practice, necessitating a thorough understanding of its impact on fish welfare. This study aimed to assess the physiological stress response of meagre (Argyrosomus...

Bradley, H. S., Craig, M. D., Tomlinson, S. et al. 2023. Ecological considerations when designing mitigation translocations: An Australian reptile case study. Animals 13(16), 2594.

Translocation science has made considerable progress over the last two decades; however, reptile translocations still frequently fail around the world. Major knowledge gaps surround the basic ecology of reptile species, including basic factors such as...

Bramati, G., Stauffer, P., Nigri, M. et al. 2023. Environmental enrichment improves hippocampus-dependent spatial learning in female C57BL/6 mice in novel IntelliCage sweet reward-based behavioral tests. Frontiers in Behavioral Neuroscience 17.

The IntelliCage is an automated home-cage system that allows researchers to investigate the spontaneous behavior and learning abilities of group-housed mice. The IntelliCage enables us to increase the standardization and reproducibility of behavioral outcomes by...

Brando, S., Norman, M. 2023. Handling and training of wild animals: Evidence and ethics-based approaches and best practices in the modern zoo. Animals 13(14), 2247.

There is an ethical responsibility to provide all animals living in human care with optimal and positive well-being. As animals living in zoos and aquariums frequently interact with their human caregivers as part of their...

Brezov, D., Hristov, H., Dimov, D. et al. 2023. Predicting the rectal temperature of dairy cows using infrared thermography and multimodal machine learning. Applied Sciences 13(20), 11416.

The paper proposes an approach for estimating the rectal temperature of dairy cows based on the non-invasive real-time monitoring of their respiration rates and the temperature-humidity index (THI) of the environment, combined with the analysis...

Brown, C., Schluessel, V. 2023. Smart sharks: A review of chondrichthyan cognition. Animal Cognition 26(1), 175–188.

450 million years of evolution have given chondrichthyans (sharks, rays and allies) ample time to adapt perfectly to their respective everyday life challenges and cognitive abilities have played an important part in that process. The...