Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Powell, A. 2021. Rubber net mesh reduces scale loss during routine handling of farmed Atlantic salmon (Salmo salar). Animal Welfare 30(1), 19-24.

Atlantic salmon (Salmo salar) are an economically and ecologically important fish species that interact with humans during farming, fishing and research operations. Routine handling in nets exposes fish to mesh and causes scale loss. To...

Alnes, I. B., Jensen, K. H., Skorping, A. et al. 2021. Ontogenetic change in behavioral responses to structural enrichment from fry to parr in juvenile Atlantic salmon (Salmo salar L.). Frontiers in Veterinary Science 8, 638888.

Enrichment is widely used as a tool for studying how changes in environment affect animal behavior. Here, we report an experimental study investigating if behaviors shaped by stimuli from environmental enrichment depending on the stage...

Travain, T., Valsecchi, P. 2021. Infrared thermography in the study of animals’ emotional responses: A critical review. Animals 11(9), 2510.

Whether animals have emotions was historically a long-lasting question but, today, nobody disputes that they do. However, how to assess them and how to guarantee animals their welfare have become important research topics in the...

Janhunen, M., Piironen, J., Vainikka, A. et al. 2021. The effects of environmental enrichment on hatchery-performance, smolt migration and capture rates in landlocked Atlantic salmon. PLOS ONE 16(12), e0260944.

Enrichment of rearing environment with natural elements has been suggested to improve the welfare and post-release survival of cultured fish. We studied the combined effects of shelter structures, periodical water flow and water level changes...

Insel, N., Shambaugh, K. L., Beery, A. K. 2020. Female degus show high sociality but no preference for familiar peers. Behavioural Processes 174, 104102.

Group-living animals vary in social behavior across multiple dimensions, including in the selectivity of social interactions with familiar versus unfamiliar peers. Standardized behavioral tests can be used to tease apart different dimensions of behavior. These...

Byrnes, E. E., Lear, K. O., Morgan, D. L. et al. 2020. Respirometer in a box: Development and use of a portable field respirometer for estimating oxygen consumption of large‐bodied fishes. Journal of Fish Biology 96(4), 1045-1050.

Respirometry has become the standard method for measuring the metabolic rate of fishes. Traditionally, respirometry has required the fish to be kept in captivity and tested under controlled conditions; however, many species do not readily...

Overduin-de Vries, A. M., de Vries, H., Vermande, M. M. et al. 2020. Both aggressive and affiliative behaviour facilitate resource access in high-ranking female long-tailed macaques (Macaca fascicularis). Behaviour 157 (3-4), 267-287.

Access to limited resources may be achieved by dominance as well as by high rates of aggressive and affiliative behaviour. We investigated the relative effectiveness of dominance rank and aggressive and affiliative behaviour in accessing...

Hubert, J., Neo, Y. Y., Winter, H. V. et al. 2020. The role of ambient sound levels, signal-to-noise ratio, and stimulus pulse rate on behavioural disturbance of seabass in a net pen. Behavioural Processes 170, 103992.

Anthropogenic sources increasingly contribute to the underwater soundscape and this may negatively impact aquatic life, including fish. Anthropogenic sound may mask relevant sound, alter behaviour, physiology, and may lead to physical injury. Behavioural effect studies...

Hanzen, C., Lucas, M. C., OʼBrien, G. et al. 2020. Surgical implantation of radio tags in three eel species (Anguilla spp.) in South Africa. Journal of Fish Biology 96(3), 847-852.

Studies have reported poor survival of surgically tagged freshwater fishes in warm African waters. This study aimed to assess the applicability of using radio telemetry (and surgical implantation of tags) for Anguilla spp. Nineteen yellow...

Rogers, L., Sales, E., Shamsi, S. et al. 2020. Aggressive encounters lead to negative affective state in fish. PLOS ONE 15(4), e0231330.

Animals show various behavioural, neural and physiological changes in response to losing aggressive encounters. Here, we investigated affective state, which are emotion-like processes influenced by positive or negative experiences, in a territorial fish following aggressive...

Keeping, J. A., Reeve‐Arnold, K. E., Burns, N. M. et al. 2020. Computer‐aided photo‐identification of a rare stingray, Megatrygon microps. Journal of Fish Biology 96(3), 815-819.

A protocol for photo‐identification of individual Megatrygon microps has been defined. One hundred and four identification photographs were taken between 2005 and 2019. Spot patterns on the dorsal surface were used to identify individuals. Unique...

Skov, C., Hansen, J. H., Baktoft, H. et al. 2020. A field evaluation of long‐term effects of PIT tagging. Journal of Fish Biology 96(4), 1055-1059.

Passive integrated transponder (PIT)‐tagging is commonly used in behavioural studies of fish, although long‐term evaluations of effects from tagging under natural conditions are scarce. We PIT‐tagged common bream Abramis brama, European perch Perca fluviatilis, pike...

Zemanova, M. A. 2020. Towards more compassionate wildlife research through the 3Rs principles: Moving from invasive to noninvasive methods. Wildlife Biology 2020(1), no page numbers.

Research in ecology and wildlife biology remains crucial for increasing our knowledge and improving species management and conservation in the midst of the current biodiversity crisis. However, obtaining information on population status often involves invasive...

Fujinami, Y., Semba, Y. 2020. Non-lethal assessment of reproductive stage for female blue sharks Prionace glauca using sex steroid hormones. Journal of Fish Biology 96(6), 1501–1504.

Plasma concentrations of progesterone (P4) and 17β‐oestradiol (E2) in juvenile, pre‐ovulatory, early, mid‐ or late pregnancy stages of female blue sharks Prionace glauca were analysed. Concentrations of P4 were significantly higher in pregnant than in...

Mishra, P. S., Pal, A., Velankar, A. D. et al. 2020. Does rank rule? Rank-related grooming patterns in Nicobar long-tailed macaques Macaca fascicularis umbrosus. Primates 61(3), 443–453.

Primates maintain social bonds with specific individuals in the group by directing grooming toward them. Social grooming is often targeted toward individuals with whom the most benefits can be exchanged, which are usually the high-ranking...

Stocker, M. Loretto, M.-C., Sterck, E. H. M. et al. 2020. Cooperation with closely bonded individuals reduces cortisol levels in long-tailed macaques. Royal Society Open Science 7(5), 7191056.

Many animal species cooperate with conspecifics in various social contexts. While ultimate causes of cooperation are being studied extensively, its proximate causes, particularly endocrine mechanisms, have received comparatively little attention. Here, we present a study...

Kennedy, R. J., Evans, D., Allen, M. 2020. Long-term retention of dummy acoustic transmitters in adult brown trout. Journal of Fish Biology 97(4), 1281–1284.

A group of 36 1+ age class Salmo trutta were surgically implanted with dummy acoustic tags and monitored for 370 days. In total 13 tags were expelled throughout the experiment with an overall tag loss...

Lewis, R., Dawson, S., Rayment, W. 2020. Estimating population parameters of broadnose sevengill sharks (Notorynchus cepedianus) using photo identification capture-recapture. Fish Biology 97(4), 987–995.

Capture-recapture methods are now widely used for quantifying abundance and movements of elasmobranchs. This method requires that individuals in the population are uniquely identifiable and has been employed in studies that use baited underwater video...

Neff, E.P. 2020. Where the wild zebrafish are. Lab Animal 49(11), 305–309.

Journeying into the field to study a model organism in its natural habitats. “Seeing them in the wild and seeing what kind of substrates they are on has really helped inform that for us, and...

Ruberto, T., Talbot, J. L., Reddon, A. R. 2020. Head up displays are a submission signal in the group-living daffodil cichlid. Behavioural Processes 181, 104271.

Dominance hierarchies can reduce conflict within social groups and agonistic signals can help to establish and maintain these hierarchies. Behaviours produced by subordinates in response to aggression are often assumed to function as signals of...

Shelton, D. S., Shelton, S. G., Daniel, D. K. et al. 2020. Collective behavior in wild zebrafish. Zebrafish 17(4), 243-252.

Anthropogenic change is expected to alter environments at alarming rates. To predict the impact of modified environments on social behavior, we must study the relationship between environmental features and collective behavior in a genetically tractable...

Ordóñez-Grande, B., Guerreiro, P. M., Sanahuja, I. et al. 2020. Evaluation of an acute osmotic stress in European sea bass via skin mucus biomarkers. Animals 10(9), 1546.

European sea bass is a marine teleost which can inhabit a broad range of environmental salinities. So far, no research has studied the physiological response of this fish to salinity challenges using modifications in skin...

Ruiz-García, D., Adams, K., Brown, H. et al. 2020. Determining stingray movement patterns in a wave-swept coastal zone using a blimp for continuous aerial video surveillance. Fishes 5(4), 31.

Stingrays play a key role in the regulation of nearshore ecosystems. However, their movement ecology in high-energy surf areas remains largely unknown due to the notorious difficulties in conducting research in these environments. Using a...

McKay, L., Hunninck, L., Sheriff, M. 2020. A field-based adaptation of the classic morris water maze to assess learning and memory in a free-living animal. Animal Behavior and Cognition 9(4), 396–407.

Free-living animals rely on cognitive functions, such as learning and memory, for numerous aspects of their survival. However, research involving these mechanisms is often limited to the laboratory where animals are far removed from natural...

Sundin, J., Morgan, R., Finnøen, M. H. et al. 2019. On the observation of wild zebrafish (Danio rerio) in India. Zebrafish 16(6), 546-553.

Zebrafish is one of the world's most widely used laboratory species, and it is utilized to answer important research questions in disparate fields such as biomedicine, genetics, developmental biology, pharmacology, toxicology, physiology, and evolution. Despite...