Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Charbonneau, J. A., Amaral, D. G. Bliss-Moreau, E. 2022. Social housing status impacts rhesus monkeys’ affective responding in classic threat processing tasks. Scientific Reports 12(1), 4140.

Individuals’ social contexts are broadly recognized to impact both their psychology and neurobiology. These effects are observed in people and in nonhuman animals who are the subjects for comparative and translational science. The social contexts...

Prescott, M. J., Leach, M. C., Truelove, M. A. 2022. Harmonisation of welfare indicators for macaques and marmosets used or bred for research. F1000Research 11, 272.

Background: Accurate assessment of the welfare of non-human primates (NHPs) used and bred for scientific purposes is essential for effective implementation of obligations to optimise their well-being, for validation of refinement techniques and novel welfare...

Wahltinez, S. J., Stacy, N. I., Hadfield, C. A. et al. 2022. Perspective: Opportunities for advancing aquatic invertebrate welfare. Frontiers in Veterinary Science 9, 973376.

Welfare considerations and regulations for invertebrates have lagged behind those for vertebrates, despite invertebrates comprising more than 95% of earth’s species. Humans interact with and use aquatic invertebrates for exhibition in zoos and aquaria, as...

Wilson, C. H., Wyeth, R. C., Spicer, J. I. et al. 2022. Effect of animal stocking density and habitat enrichment on survival and vitality of wild green shore crabs, Carcinus maenas, maintained in the laboratory. Animals 12(21), 2970.

The wide geographic distribution, large size and ease of capture has led to decapod crustaceans being used extensively in laboratory experiments. Recently in the United Kingdom decapod crustaceans were listed as sentient beings, resulting in...

Galpayage Dona, H. S., Solvi,C., Kowalewska, A. et al. 2022. Do bumble bees play? Animal Behaviour 194, 239-251.

A variety of animals have been found to interact with and manipulate inanimate objects ‘just for fun’, that is, to play. Most clear examples of object play come from mammals and birds. However, whether insects...

Bethell, E. J., Khan, W., Hussain, A. 2022. A deep transfer learning model for head pose estimation in rhesus macaques during cognitive tasks: Towards a nonrestraint noninvasive 3Rs approach. Applied Animal Behaviour Science 255, 105708.

Head orientation is a measure of attention used in behavioral psychological research with non-human primates. It is used across a broad range of disciplines and settings, from the field to the laboratory. Field methods are...

Liew, K.-S., Tan, K., Liew, H. J. et al. 2022. Responses of purple mud crab (Scylla tranquebarica) to various saccharide solutions and the saccharide-coated pelleted feeds. Applied Animal Behaviour Science 257, 105793.

Mud crabs (Scylla spp.) are economically important portunid species for aquaculture in many countries across the Indo-Pacific region. However, there is still no commercial species-specific formulated feed available for mud crabs, and mud crabs generally...

Albanese, V., Berardi, R., Llorente, M. et al. 2022. Mechanisms of expression of object play: A comparative study of stone handling in two captive groups of long-tailed macaques (Macaca fascicularis fascicularis). Behavioural Processes 203, 104774.

Stone handling (SH) is a form of solitary object play that is socially learned and culturally maintained. We studied two captive groups (Modena, N = 20; Padova, N = 20) of common long-tailed macaques housed...

Zhang, H., Zhu, B., Yu, L. et al. 2022. Shelter color selection of juvenile swimming crabs (Portunus trituberculatus). Fishes 7(5), 296.

Color preference testing for animals is a prerequisite for optimizing facilities and ensuring animal welfare in aquaculture. Swimming crabs (Portunus trituberculatus) are aggressive, and shelters are often installed in ponds to reduce the high mortality...

Brando, S., Coe, J. 2022. Confronting back-of-house traditions: Primates as a case study. Journal of Zoological and Botanical Gardens 3(3), 366–397.

This review commentary focuses on traditional management practices and facility design with suggested improvements in non-public primate management areas, often called “back-of-house”, (henceforth BOH) in zoos, sanctuaries, and research facilities. Progress has been made toward...

Briffa, M. 2022. When should we ascribe sentience to animals? A commentary on “Hermit crabs, shells and sentience” (Elwood 2022). Animal Cognition 25(6), 1375–1380.

In a new review article, experiments on hermit crab behaviour are discussed in the context of possible animal sentience. Sentience can be defined as the ability to experience feelings such as pleasure or pain but...

Dong, B., Liu, J.-X., Quan, R.-C. et al. 2022. Mirror image stimulation could reverse social-isolation-induced aggressiveness in the high-level subsocial lactating spider. Animal Cognition 25(5), 1345–1355.

Conspecific aggressiveness often increases after social isolation for species that are not entirely solitary, and this increased aggression could also be reversed after resocialization. However, literature on this aggression plasticity refers to either permanently social...

Elwood, R. W. 2022. Caution is required when considering sentience in animals: A response to the commentary by Briffa (2022) on “Hermit crabs, shells, and sentience” (Elwood 2022). Animal Cognition 25(6), 1371–1374.

My recent review examined the complex and intimate relationship between hermit crabs and the empty gastropod shells upon which they depend for survival. Because shells come with costs as well as benefits, the crabs are...

Elwood, R. W. 2022. Hermit crabs, shells, and sentience. Animal Cognition 25(5), 1241–1257.

Hermit crabs have an intimate relationship with gastropod shells and show numerous activities by which they locate, select, and change shells in different contexts. They gather information about new shells and update information about their...

Gresham, C., Mathews, F., Ferguson, A. et al. 2022. Does handling for public talks in zoos affect the behaviour of captive Mexican red-kneed spiders Brachypelma hamorii? Journal of Zoological and Botanical Gardens 3(2), 158–169.

Zoos include invertebrates in visitor interaction sessions to educate and spread conservation messages to the public. Yet, the welfare implications of these encounters on invertebrates are unstudied. Empirical studies reveal negative effects of handling on...

Takahashi, K. 2022. Changes in the anxiety-like and fearful behavior of shrimp following daily threatening experiences. Animal Cognition 25(2), 319–327.

Behavioral variation in animals is often influenced by experience. Previous studies have found that daily threatening experiences can enhance fear- and anxiety-like behaviors in some vertebrates. However, it is unclear whether the change in fear/anxiety...

Kishida, T., Motokawa, Y., Yokoi, R. et al. 2022. Less invasive, simultaneous, and continuous measurements of locomotor activity and body temperature using the nano tag® small accelerometer device in cynomolgus monkeys. Journal of Pharmacological and Toxicological Methods 118, 107224.

Locomotor activity and body temperature evaluations of cynomolgus monkeys are useful to understand the effects of drugs on the central nervous system. Here, we describe a simple, inexpensive, and less invasive evaluation method using the...

Schnell, A. K., Amodio, P., Boeckle, M. et al. 2021. How intelligent is a cephalopod? Lessons from comparative cognition. Biological Reviews 96, 162-178.

The soft‐bodied cephalopods including octopus, cuttlefish, and squid are broadly considered to be the most cognitively advanced group of invertebrates. Previous research has demonstrated that these large‐brained molluscs possess a suite of cognitive attributes that...

Rox, A., van Vliet, A. H., Langermans, J. A. M. et al. 2021. A stepwise male introduction procedure to prevent inbreeding in naturalistic macaque breeding groups. Animals 11(2), 545.

Male introductions into captive primate breeding groups can be risky and unsuccessful. However, they are necessary to prevent inbreeding in naturalistic breeding groups. The procedure used to introduce new individuals may affect the success and...

Labuguen, R., Matsumoto, J., Negrete, S. B. et al. 2021. MacaquePose: A novel “in the wild” macaque monkey pose dataset for markerless motion capture. Frontiers in Behavioral Neuroscience 14, 581154.

Video-based markerless motion capture permits quantification of an animal's pose and motion, with a high spatiotemporal resolution in a naturalistic context, and is a powerful tool for analyzing the relationship between the animal's behaviors and...

Bailey, K. L., Young, L. A., Long, C. E. et al. 2021. Use of introduction enclosures to integrate multimale cohorts into groups of female rhesus macaques (Macaca mulatta). JAALAS 60(1), 103-111.

Integrating animals into a new group is a challenge for both free-ranging and captive adult male rhesus monkeys (Macaca mulatta), and for females in groups receiving new males. To ensure the genetic viability of the...

Lambert, K. 2021. DIY: Ice cream cone spiced foraging cups. Laboratory Animal Science Professional 9(1) (January/February), 36.

This DIY snack is great for NHPs and can be customized in a variety of ways.

Bader, L., Janavaris, M., Coleman, K. et al. 2021. It takes a village: A case study in improving animal welfare with a team approach. Laboratory Animal Science Professional 9(1) (January/February), 38-40.

There are many factors that need to be considered when caring for groups of nonhuman primates (NHPs) in research, including clinical, behavioral, and scientific issues. Otherwise, there is the potential that decisions are made without...

Lambert, K. 2021. DIY: Ice produce blocks. Laboratory Animal Science Professional 9(2) (March/April), 41.

This great cool-down snack is ideal for group or singly housed swine or nonhuman primates (particularly in larger pen-style housing). This item can be customized for canines as well by modifying the liquid used and/or...

Guisnet, A., Maitra, M., Pradhan, S. et al. 2021. A three-dimensional habitat for C. elegans environmental enrichment. PLOS ONE 16(1), e0245139.

As we learn more about the importance of gene-environment interactions and the effects of environmental enrichment, it becomes evident that minimalistic laboratory conditions can affect gene expression patterns and behaviors of model organisms. In the...