Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Turner, P. V., Pang, D. S., Lofgren, J. L. 2019. A review of pain assessment methods in laboratory rodents. Comparative Medicine 69(6), 451–467.

Ensuring that laboratory rodent pain is well managed underpins the ethical acceptability of working with these animals in research. Appropriate treatment of pain in laboratory rodents requires accurate assessments of the presence or absence of...

Lawrence, M. J., Raby, G. D., Teffer, A. K. et al. 2020. Best practices for non-lethal blood sampling of fish via the caudal vasculature. Journal of Fish Biology 97(1), 4–15.

Blood sampling through the caudal vasculature is a widely used technique in fish biology for investigating organismal health and physiology. In live fishes, it can provide a quick, easy and relatively non‐invasive method for obtaining...

Köbrunner, D., Waiblinger, S., Stetina, B. U. et al. 2020. Insight into husbandry conditions, health, and behavior of pet ferrets (Mustela putorius furo) among German-speaking ferret owners. Journal of Veterinary Behavior 37, 8-19.

Few data are published about different ferret husbandry practices in terms of housing, enrichment, feeding, social management, and the health status of ferrets. However, these factors are crucial for animal welfare and influence animal behavior...

Chu, D. 2020. Malawi cichlids: A colorful 4th R story. Laboratory Animal Science Professional 8(3) (May/June), 24-25.

This article describes the successful rehoming of 60 Malawi cichlids from a vivarium at Stanford University to San Diego Zoo and the California Academy of Sciences.

Barber, J. 2020. Getting to know Siamese fighting fish. Laboratory Animal Science Professional 8(3) (May/June), 26-27.

This article describes the biology, husbandry, and care of Siamese fighting fish (also known as the betta fish) at Columbia University.

Jones, E. J., Poole, K. C., Sollini, J. et al. 2020. Seasonal weight changes in laboratory ferrets. PLOS ONE 15(8): e0232733.

Ferrets (Mustela putorius furo) are a valuable animal model used in biomedical research. Like many animals, ferrets undergo significant variation in body weight seasonally, affected by photoperiod, and these variations complicate the use weight as...

Arechavala-Lopez, P., Caballero-Froilán, J. C., Jiménez-García, M. et al. 2020. Enriched environments enhance cognition, exploratory behaviour and brain physiological functions of Sparus aurata. Scientific Reports 10, 11252.

Environmental enrichment is considered as a recommended tool to guarantee or improve the welfare of captive fish. This study demonstrates for the first time that structural environmental enrichment enhances cognition, exploratory behaviour and brain physiological...

Reinhardt, V. (ed.) 2020. It’s Okay to Cry - Discussions by the Laboratory Animal Refinement & Enrichment Forum [LAREF], Volume V. Animal Welfare Institute, Washington, DC.

This is the 5th volume of selected discussions that took place on the electronic Laboratory Animal Refinement & Enrichment Forum between February 2016 and December 2019. The forum was created in October 2002; it allows...

Thoré, E. S. J., Brendonck, L., Pinceel, T. 2020. Conspecific density and environmental complexity impact behaviour of turquoise killifish (Nothobranchius furzeri). Fish Biology 97(5), 1448–1461.

Fish models are essential for research in many biological and medical disciplines. With a typical lifespan of only 6 months, the turquoise killifish (Nothobranchius furzeri) was recently established as a time- and cost-efficient model to...

Strait, K.,Chisholm, A., Kusovska, C. et al. 2020. Water pigs! Capybara husbandry in a biomedical research lab. Laboratory Animal Science Professional 8(5) (September/October), 14-18.

Capybaras, also known as “water pigs,” are the world’s largest rodent. Although these animals are closely related to guinea pigs, with a shoulder height of approximately 2 ft, coarse brown fur, and partially webbed feet...

Dupepe, L. M., Dauchy, R. T., McAndrew, D. et al. 2020. Eliminating light-at-night contamination during a lab animal facility renovation. Laboratory Animal Science Professional 8(5) (September/October), 60-62.

Relocating laboratory animal research from one animal facility room to another in advance of major renovations can be a daunting task for scientists and animal care personnel alike. This is especially so regarding controlled lighting...

Mwobobia, R., Abelson, K., Kanui, T. 2020. Housing behaviour of the naked mole rat (Heterocephalus glaber) under laboratory conditions. Scandinavian Journal of Laboratory Animal Science 46(1), 16-24.

The naked mole rat (Heterocephalus glaber) is a rodent that has gained importance as a biomedical research model for various conditions including hypoxic brain injury, cancer and nociception. It is captured from the wild and...

Chapa, J. M., Maschat, K., Iwersen, M. et al. 2020. Accelerometer systems as tools for health and welfare assessment in cattle and pigs – A review. Behavioural Processes 181, 104262.

Welfare assessment has traditionally been performed by direct observation by humans, providing information at only selected points in time. Recently, this assessment method has been questioned, as ‘Precision Livestock Farming’ technologies may be able to...

Lang, G. P. S. A., Rose, P. E., Nash, S. M. et al. 2020. The nocturnal activity of a commonly housed rodent: How African pygmy dormice (Graphiurus murinus) respond to an enriched environment? Journal of Veterinary Behavior 38, 82-88.

Exotic rodents are becoming increasingly popular in industry; however, there is limited empirical evidence to guide husbandry practices. African pygmy dormice (Graphiurus murinus) are typical in this respect. This research aimed to determine the effect...

Ruberto, T., Talbot, J. L., Reddon, A. R. 2020. Head up displays are a submission signal in the group-living daffodil cichlid. Behavioural Processes 181, 104271.

Dominance hierarchies can reduce conflict within social groups and agonistic signals can help to establish and maintain these hierarchies. Behaviours produced by subordinates in response to aggression are often assumed to function as signals of...

Tilley, C. A., Carreño Gutierrez, H., Sebire, M. et al. 2020. Skin swabbing is a refined technique to collect DNA from model fish species. Scientific Reports 10(1), 18212.

Model fish species such as sticklebacks and zebrafish are frequently used in studies that require DNA to be collected from live animals. This is typically achieved by fin clipping, a procedure that is simple and...

Ordóñez-Grande, B., Guerreiro, P. M., Sanahuja, I. et al. 2020. Evaluation of an acute osmotic stress in European sea bass via skin mucus biomarkers. Animals 10(9), 1546.

European sea bass is a marine teleost which can inhabit a broad range of environmental salinities. So far, no research has studied the physiological response of this fish to salinity challenges using modifications in skin...

Eshar, D., Beaufrère, H. 2020. Anesthetic effects of alfaxalone–ketamine, alfaxalone–ketamine–dexmedetomidine, and alfaxalone–butorphanol–midazolam administered intramuscularly in five striped palm squirrels (Funambulus pennantii). JAALAS 59(4), 384-392.

Injectable anesthesia protocols for five striped palm squirrels (Funambulus pennantii) are poorly described in the literature. In this study, male intact squirrels received intramuscular injections of either alfaxalone (6 mg/kg) and ketamine (40 mg/ kg...

Ambar, N., Eshar, D., Shrader, T. C. et al. 2020. Anesthetic effects of intramuscular alfaxalone–ketamine in naked mole rats (Heterocephalus glaber). JAALAS 59(5), 539-545.

In this study, adult intact male and female (n = 10) naked mole rats (Heterocephalus glaber) were anesthetized by using a combination of ketamine (20 mg/kg IM), and alfaxalone (4.0 mg/kg IM). Induction and recovery...

Slavík, O., Horký, P., Velíšek, J., et al. 2020. Pupil size variation as a response to stress in European catfish and its application for social stress detection in albino conspecifics. PLOS ONE, 15(12), e0244017.

Hormonal changes such as increased cortisol level in blood plasma in response to stress and social environmental stimuli are common among vertebrates including humans and typically accompanied by other physiological processes, such as changes in...

Mogil, J. S., Pang, D. S. J., Silva Dutra, G. G. et al. 2020. The development and use of facial grimace scales for pain measurement in animals. Neuroscience & Biobehavioral Reviews 116, 480-496.

The measurement of pain in animals is surprisingly complex, and remains a critical issue in veterinary care and biomedical research. Based on the known utility of pain measurement via facial expression in verbal and especially...

Butler, J. L., Kennerley, S. W. 2019. Mymou: A low-cost, wireless touchscreen system for automated training of nonhuman primates. Behaviour Research Methods 51, 2559–2572.

Training nonhuman primates (NHPs) to perform cognitive tasks is essential for many neuroscientific investigations, yet laboratory training is a time-consuming process with inherent limitations. Habituating NHPs to the laboratory staff and experimental equipment can take...

Ellis, T., Rimmer, G. S. E., Parker, S.-J. et al. 2019. In-tank underwater cameras can refine monitoring of laboratory fish. Animal Welfare 28(2), 191-203.

Laboratory animals need to be monitored to check the status of their health and welfare. Routine checks of laboratory fish are limited to visual observations of physical appearance and behaviour, but for species held in...

Batzina, A., Drossos, I.-P., Karakatsouli, N. 2019. Effects of familiarity on individual growth and feeding behaviour of European seabass Dicentrarchus labrax. Applied Animal Behaviour Science 211, 112-117.

Available literature indicates that fish are able to recognize familiar conspecifics and that familiarity may offer important benefits (e.g. more stable social environment, improved foraging behavior, growth, survival). In the practice of intensive rearing of...

Howell, C. P., Cheyne, S. M. 2019. Complexities of using wild versus captive activity budget comparisons for assessing captive primate welfare. Journal of Applied Animal Welfare Science 22(1), 78-96.

Activity budget comparisons between groups or individuals in the wild and those in captivity are commonly used to determine the range of wild-type behaviors that nonhuman animals in captivity perform. These comparisons are conducted with...