Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Griffioen, A. B., Janssen, W., Menke,T. et al. 2022. Does tagging transparent fish increase predation risk? A laboratory study with glass eel (Anguilla anguilla) and sea bass (Dicentrarchus labrax). Journal of Fish Biology 100(1), 184-191.

Barriers in the estuaries of the rivers prevent the immigration of glass eels (Anguilla anguilla) arriving on the European coast every spring. This leads to an unnatural accumulation of migrating glass eels below the barriers...

Swarr, T. R., Myrick, C. A., Fitzpatrick, R. M. 2022. Tag retention in and effects of passive integrated transponder tagging on survival and swimming performance of a small-bodied darter. Journal of Fish Biology 100(3), 705-714.

Fisheries biologists have been hesitant to use passive integrated transponder (PIT) tags in small-bodied fishes (40–200 mm TL) such as darters (Percidae: Etheostomatinae) because of the fishes' size and potential effect on swimming performance. The authors used...

Boardman, R. M., Pinder, A. C., Piper,A. T. et al. 2022. Non-lethal sampling for the stable isotope analysis of the critically endangered European eel Anguilla anguilla: How fin and mucus compare to dorsal muscle. Journal of Fish Biology 100(3), 847-851.

Ecological studies on the critically endangered European eel Anguilla anguilla often incorporate stable isotope analysis that typically uses dorsal muscle sampled from euthanised eels. To minimise the lethal sampling of imperilled populations, fin tissue and/or...

Perret-Thiry, C., Raulic, J., Vergneau-Grosset, C. 2022. Evaluation of prolonged immersion in tricaine methanesulfonate for juvenile goldfish (Carassius auratus) euthanasia. Journal of the American Veterinary Medical Association 260(8), 911-915.

OBJECTIVE: Doses of buffered tricaine methanesulfonate (MS-222) up to 1000 mg/L for 15 minutes are reported inefficient to produce euthanasia in goldfish. The goal of this study was to determine if goldfish can be euthanized...

de Faria, C. M., Sá, F. de S., Costa, D. D. L. et al. 2022. Environmental enrichment for collared peccaries Dicotyles tajacu, Tayassuidae in managed care: Different items provoke different behavioural responses. Journal of Zoo and Aquarium Research 10(2), 82–90.

Being in human care often modifies the behaviour of animals, mainly because of the lack of environmental stimuli, and the ease of finding food and reproductive partners. Animals in human care may have a poorer...

Buckmaster, C. L., Levesque, D., LaFollette, M. et al. 2022. Five hot topics in refinement of nonhuman primate neuroscience research. Laboratory Animal Science Professional 10(1) (January/February), 24-26.

Members of the North American 3Rs Collaborative (NA3RsC) refinement initiative have chosen to summarize developments in five hot topics of interest: 1. Tips for welfare-friendly transport, chairing, and restraint; 2. Guidance on refining food and...

Medina, A. 2022. Creative enrichment for nonhuman primates. Laboratory Animal Science Professional 10(1) (January/February), 42-43.

Providing novel and creative enrichments for nonhuman primates improves their mental wellbeing and is thus an important aspect of all husbandry programs. These enrichments are often presented through variations in diet, toys, and environmental features...

Buchanan, K. 2022. DIY: Ants on a log. Laboratory Animal Science Professional 10(1) (January/February), 44.

This traditional snack has a variety of options for NHP enrichment. From fruit to cereals, get creative with the “ants” and remember to consider different fillings for the celery log.

Aird, T., Pierre, P. J. 2022. Refining enrichment toy interactions in common marmosets through usage assessment. Laboratory Animal Science Professional 10(1) (January/February), 64-66.

Apart from species-typical foraging behavior, a large body of the literature addresses enriching captive marmoset environments through structural and housing adaptations to promote activity and exploration. These studies simulate vertical elements and climbing substrates in...

Pereira, P., Fandos Esteruelas, N., Nakamura, M. et al. 2022. Hair cortisol concentration reflects the life cycle and management of grey wolves across four European populations. Scientific Reports 12(1), 5697.

Hair can be preferred over other biological matrices for ethical reasons. Hair samples can be obtained non-invasively, thus addressing the pressing issues of animal welfare in wildlife research. Additionally, hair collection is simple and inexpensive...

Lutz, C. K., Coleman, K., Hopper, L.M. et al. 2022. Nonhuman primate abnormal behavior: Etiology, assessment, and treatment. American Journal of Primatology 84(6), e23380.

Across captive settings, nonhuman primates may develop an array of abnormal behaviors including stereotypic and self-injurious behavior. Abnormal behavior can indicate a state of poor welfare, since it is often associated with a suboptimal environment...

Deacon, F., Daffue, W., Nel, P. 2022. Effective field immobilisation and capture of giraffe (Giraffa camelopardalis). Animals 12(10), 1290.

One of the highest occurrences of mortalities among giraffes (Giraffa camelopardalis) takes place during immobilisations, captures and translocations. Common mistakes, human error, unforeseen risks, the awkward anatomy and the sheer size of the animal are...

Schilling, A.-K., Mazzamuto, M. V., Romeo, C. 2022. A review of non-invasive sampling in wildlife disease and health research: What’s new? Animals 12(13), 1719.

In the last decades, wildlife diseases and the health status of animal populations have gained increasing attention from the scientific community as part of a One Health framework. Furthermore, the need for non-invasive sampling methods...

Eisenbeiser, S., Serbe-Kamp, É., Gage, G. J. et al. 2022. Gills just want to have fun: Can fish play games, just like us? Animals 12(13), 1684.

It is common to observe play in dogs, cats, and birds, but have we been ignoring play in one of the most common house pets of all… fish? Aquarium fish are often used as meditative...

Knaebe, B., Weiss, C. C., Zimmermann, J. et al. 2022. The promise of behavioral tracking systems for advancing primate animal welfare. Animals 12(13), 1648.

Recent years have witnessed major advances in the ability of computerized systems to track the positions of animals as they move through large and unconstrained environments. These systems have so far been a great boon...

Lichak, M. R., Barber, J. R., Kwon, Y. M. et al. 2022. Care and use of Siamese fighting fish (Betta splendens) for research. Comparative Medicine 72(3), 169-180.

Betta splendens, also called Siamese fighting fish or 'betta,' are a popular species in the fishkeeping hobby. Native to South- east Asia, betta have been selectively bred for their fighting ability for hundreds of years...

Ojelade, O. C., Durosaro, S. O., Akinde, A. O. et al. 2022. Environmental enrichment improves the growth rate, behavioral and physiological response of juveniles of Clarias gariepinus under laboratory conditions. Frontiers in Veterinary Science 9, 980364.

Environmental enrichment (EE) improves the growth rate and welfare of some cultured fishes. However, most cultured fish species are raised in non-enriched housing conditions. Clarias gariepinus is an important commercial fish species, but little is...

de França Santos, M., de Menezes Galvão, A. C., Santos Silva, F. et al. 2022. Welfare improvement by enrichment programs in common marmoset females under social isolation. Journal of Applied Animal Welfare Science 25(3), 297-309.

Animal welfare is critical to buffer stress in captive animals and to ensure the reliability of data from studies. The most usual environmental enrichment technique (EE) for social non-human primates is the social enrichment. However...

Runde, B. J., Buckel, J. A., Bacheler, N. M. et al. 2022. Evaluation of six methods for external attachment of electronic tags to fish: Assessment of tag retention, growth and fish welfare. Journal of Fish Biology 101(3), 419-430.

External attachment of electronic tags has been increasingly used in fish studies. Many researchers have used ad hoc attachment methods and provided little or no validation for the assumption that tagging itself does not bias...

Spitzer, H. B., Meagher, R. K., Proudfoot, K. L. 2022. The impact of providing hiding spaces to farmed animals: A scoping review. PLOS ONE 17(11), e0277665.

Many wild animals perform hiding behaviours for a variety of reasons, such as evading predators or other conspecifics. Unlike their wild counterparts, farmed animals often live in relatively barren environments without the opportunity to hide...

Henry, B. A., Power, M. L., Maslanka, M. T. et al. 2022. Challenges of devising a milk recipe in a hand‐reared hippopotamus (Hippopotamus amphibius). Zoo Biology 41(4), 360-364.

In January 2017, a Nile hippopotamus (Hippopotamus amphibious) was born approximately six weeks premature at the Cincinnati Zoo & Botanical Garden. Due to the calf's weakened condition and lack of interest from the dam, management...

Sohel Khan, A., Lea, S. E. G., Chand, P. et al. 2022. Predictors of psychological stress and behavioural diversity among captive red panda in Indian zoos and their implications for global captive management. Scientific Reports 12(1), 14034.

At high elevations, biodiversity is at elevated risk from extinctions due to rapid environmental changes. In the most of its range in Himalayas, the red panda, an endangered species, is struggling to survive in the...

Trondrud, L. M., Ugland, C., Ropstad, E. et al. 2022. Stress responses to repeated captures in a wild ungulate. Scientific Reports 12(1), 16289.

While capture-mark-recapture studies provide essential individual-level data in ecology, repeated captures and handling may impact animal welfare and cause scientific bias. Evaluating the consequences of invasive methodologies should be an integral part of any study...

Reicher, V., Bálint, A., Újváry, D. et al.2022. Non-invasive sleep EEG measurement in hand raised wolves. Scientific Reports 12(1), 9792.

Sleep research greatly benefits from comparative studies to understand the underlying physiological and environmental factors affecting the different features of sleep, also informing us about the possible evolutionary changes shaping them. Recently, the domestic dog...

Tonachella, N., Martini, A., Martinoli, M. et al. 2022. An affordable and easy-to-use tool for automatic fish length and weight estimation in mariculture. Scientific Reports 12(1), 15642.

Common aquaculture practices involve measuring fish biometrics at different growth stages, which is crucial for feeding regime management and for improving farmed fish welfare. Fish measurements are usually carried out manually on individual fish. However...