Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Anderson, M. G., Campbell, A. M., Kuhn, D. D. et al. 2022. Impact of environmental complexity and stocking density on affective states of rainbow trout (Oncorhynchus mykiss). Animal Cognition 25(5), 1331–1343.

Environmental condition, such as environmental complexity or stocking density, can directly or indirectly influence animal emotion and ultimately, affective state. Affective states of animals can be assessed through judgement bias tests, evaluating responses to ambiguous...

Bekkozhayeva, D., Cisar, P. 2022. Image-based automatic individual identification of fish without obvious patterns on the body (scale pattern). Applied Sciences 12(11), 5401.

The precision fish farming concept has been widely investigated in research and is highly desirable in aquaculture as it creates opportunities for precisely controlling and monitoring fish cultivation processes and increasing fish welfare. The automatic...

Brando, S., Coe, J. 2022. Confronting back-of-house traditions: Primates as a case study. Journal of Zoological and Botanical Gardens 3(3), 366–397.

This review commentary focuses on traditional management practices and facility design with suggested improvements in non-public primate management areas, often called “back-of-house”, (henceforth BOH) in zoos, sanctuaries, and research facilities. Progress has been made toward...

Hepps Keeney, C., Harrison, T. M. 2022. Euthanasia complications in non-domestic species. Journal of Zoological and Botanical Gardens 3(4), 616–623.

There are very few studies describing euthanasia complications in non-domestic species. The goal of this study was to survey veterinarians to determine what complications may commonly occur during the euthanasia of non-domestic species. An online...

Lauderdale, L. K., Shorter, K. A., Zhang, D. et al. 2022. Environmental enrichment factors associated with the activity level of bottlenose dolphins under professional care. Journal of Zoological and Botanical Gardens 3(1), 44–55.

Environmental enrichment can be used to improve the welfare of dolphins in zoos and aquariums. Bottlenose dolphins under professional care are typically provided with a range of enrichment that has a variety of features and...

Matrai, E., Kwok, S. T., Boos, M. et al. 2022. Testing use of the first multi-partner cognitive enrichment devices by a group of male bottlenose dolphins. Animal Cognition 25(4), 961–973.

Alliance formation plays a crucial part in male dolphins’ lives. These partnerships may last for decades or even for a lifetime; thus, partner choice and the maintenance of these relationships are both considered key components...

Thomas, M., Reynaud, J.-G., Ledoré, Y. et al. 2022. Enrichment in a fish polyculture: Does it affect fish behaviour and development of only one species or both? Applied Sciences 12(7), 3674.

Physical enrichment of structures has been used for the last decades in aquaculture to improve fish production and welfare. Until now, this enrichment has been practiced in fish monoculture but not in fish polyculture. In...

Ikeya, K., Torisawa, S., Yamane, H. et al. 2022. Estimating the total length of Mekong giant catfish, Pangasianodon gigas, in an aquarium via stereo-video shooting and direct linear transformation. Zoo Biology 41(6), 554–559.

The Mekong giant catfish (MGC), Pangasianodon gigas, is one of the world’s largest catfish species. Endemic to the Mekong River system, the MGC is critically endangered. Six MGC were transported from Thailand to the Gifu...

Powell, A. 2021. Rubber net mesh reduces scale loss during routine handling of farmed Atlantic salmon (Salmo salar). Animal Welfare 30(1), 19-24.

Atlantic salmon (Salmo salar) are an economically and ecologically important fish species that interact with humans during farming, fishing and research operations. Routine handling in nets exposes fish to mesh and causes scale loss. To...

Tschirren, L., Bachmann, D., Güler, A. C. et al. 2021. MyFishCheck: A model to assess fish welfare in aquaculture. Animals 11(1), 145.

Welfare in animal husbandry includes considerations of biology, ethics, ecology, law and economics. These diverse aspects must be translated into common quantifiable parameters and applicable methods to objectively assess welfare in animals. To assist this...

Serres, A., Xu, C., Hao, Y. et al. 2021. The click production of captive Yangtze finless porpoises (Neophocaena asiaeorientalis asiaorientalis) is influenced by social and environmental factors. Animals 11(2), 511.

Yangtze finless porpoises use high-frequency clicks to navigate, forage, and communicate. The way in which click production may vary depending on social or environmental context has never been investigated. A group of five captive Yangtze...

Ramos, J., Balasch, J. C., Tort, L. 2021. About welfare and stress in the early stages of fish. Frontiers in Veterinary Science 8, 634434.

In conclusion, the investigations carried out up to now demonstrate that during the early stages fish show high sensitivity to many types of stressors involving an array of responses to overcome alterations that could affect...

Oliveira, A. R., Gozalo-Marcilla, M., Ringer, S. K. et al. 2021. Development, validation, and reliability of a sedation scale in horses (EquiSed). Frontiers in Veterinary Science 8, 611729.

The lack of standardization of sedation scales in horses limits the reproducibility between different studies. This prospective, randomized, blinded, horizontal and controlled trial aimed to validate a scale for sedation in horses (EquiSed). Seven horses...

Marques Maia, C., Pacheco Capelini Alves, N., Tatemoto, P. 2021. Juvenile Nile tilapia fish avoid red shelters. Journal of Applied Animal Welfare Science, 24(1), 98-106.

Shelters are frequently used for fish rearing to improve welfare conditions. In this study, whether Nile tilapia prefers specific shelter colors was evaluated. Thus, fish preference for white, red, blue, green or yellow shelters was...

Lambert, K. 2021. DIY: Ice cream cone spiced foraging cups. Laboratory Animal Science Professional 9(1) (January/February), 36.

This DIY snack is great for NHPs and can be customized in a variety of ways.

Lambert, K. 2021. DIY: Ice produce blocks. Laboratory Animal Science Professional 9(2) (March/April), 41.

This great cool-down snack is ideal for group or singly housed swine or nonhuman primates (particularly in larger pen-style housing). This item can be customized for canines as well by modifying the liquid used and/or...

Owen, J. P., Kelsh, R. N. 2021. A suitable anaesthetic protocol for metamorphic zebrafish. PLOS ONE 16(3), e0246504.

Zebrafish are frequently used as a means to investigate development. These studies increasingly require repeated anaesthesia of zebrafish during juvenile (i.e. metamorphic) stages. The effects of anaesthesia during this time remain poorly studied. The aim...

Nonnis, S., Angiulli, E., Maffioli, E. et al. 2021. Acute environmental temperature variation affects brain protein expression, anxiety and explorative behaviour in adult zebrafish. Scientific Reports 11(1), 2521.

This study investigated the effect of 4-d acute thermal treatments at 18 °C, 26 °C (control) and 34 °C on the nervous system of adult zebrafish (Danio rerio) using a multidisciplinary approach based on behavioural...

Arena, I., Marliani, G., Sabioni, S. et al. 2021. Assessment of horses’ welfare: Behavioral, hormonal, and husbandry aspects. Journal of Veterinary Behavior 41, 82-90.

Horse practitioners have difficulties with undesirable behaviors exhibited by their horses (Equus caballus), such as cribbing, weaving, or head shaking. It has been suggested that most of behavioral disorders originate from the animals’ attempt to...

Marchetto, L., Barcellos, L. J. G., Koakoski, G. et al. 2021. Auditory environmental enrichment prevents anxiety-like behavior, but not cortisol responses, evoked by 24-h social isolation in zebrafish. Behavioural Brain Research 404, 113169.

The zebrafish (Danio rerio) is widely used as a promising translational model organism for studying various brain disorders. Zebrafish are also commonly used in behavioral and drug screening assays utilizing individually tested (socially isolated) fish...

Egan, S., Kearney, C. M., Brama, P. A. J. et al. 2021. Exploring stable-based behaviour and behaviour switching for the detection of bilateral pain in equines. Applied Animal Behaviour Science 235, 105214.

Efficient and sensitive animal pain detection approaches are increasingly studied with the goal of improving animal welfare and monitoring the efficacy of treatment and rehabilitation. The aim of this study was to determine the potential...

Berlinghieri, F., Panizzon, P., Penry-Williams, I. L. et al. 2021. Laterality and fish welfare - A review. Applied Animal Behaviour Science 236, 105239.

Humans interact with fishes in many contexts including aquaculture, scientific study and companion animals. In all of these contexts, fish welfare can be compromised through anthropogenic means. Concern for fish welfare has grown considerably in...

Stomp, M., d’Ingeo, S., Henry, S. et al. 2021. Brain activity reflects (chronic) welfare state: Evidence from individual electroencephalography profiles in an animal model. Applied Animal Behaviour Science 236, 105271.

Assessing the animal welfare state is a challenge given the subjective individual cognitive and emotional processing involved. Electroencephalography (EEG) spectrum analysis has proved an ecologically valid recording situation to assess the link between brain processes...

Mönki, J., Saastamoinen, M., Karikoski, N. et al. 2021. Effects of bedding material on equine lower airway inflammation: A crossover study comparing peat and wood shavings. Frontiers in Veterinary Science 8, 656814.

Bedding materials affect stable air hygiene, and thus the development and exacerbation of equine asthma. There is limited knowledge concerning the effects of different types of bedding material on equine lower airway inflammation. The objective...

Coleman, K., Shapiro, S. J. (Eds.). 2021. Behavioral Biology of Laboratory Animals (1st ed). CRC Press, Boca Raton, FL.

This 30-chapter volume informs students and professionals about the behavioral biology of animals commonly housed in laboratory and other captive settings. Each species evolved under specific environmental conditions, resulting in unique behavioral patterns, many of...