Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Spigarelli, C., Zuliani, A., Battini, M. et al. 2020. Welfare assessment on pasture: A review on animal-based measures for ruminants. Animals 10(4), 609.

Outdoor and extensive farming systems allow animals to behave in a natural way and are often perceived as welfare friendly. Nonetheless, the natural environment poses multiple challenges to the welfare of animals, sometimes hampering their...

Mastellone, V., Scandurra, A., D’Aniello, B. et al. 2020. Long-term socialization with humans affects human-directed behavior in goats. Animals 10(4), 578.

Throughout their evolutionary history, humans have tried to domesticate a variety of wild terrestrial mammals, resulting in a limited number that has been successfully domesticated. Among these domesticated species, domestic goats (Capra aegagrus hircus) are...

Hempstead, M. N., Waas, J. R., Stewart, M. et al. 2020. Can isoflurane and meloxicam mitigate pain associated with cautery disbudding of 3-week-old goat kids? Animals 10(5), 878.

We evaluated the effect of pain mitigation strategies (isoflurane and meloxicam) on the behaviour and physiology of 3-week-old disbudded goat kids. Fifty Saanen does (mean ± SD, 21 ± 3 days old) were randomly allocated...

Earl, S. C., Hopper, L. M., Ross, S. R. 2020. Same space, different species: The influence of exhibit design on the expression of zoo-housed apes’ species-typical retiring behaviors. Animals 10(5), 836.

Wild chimpanzees frequently make arboreal nests, while wild lowland gorillas typically nest on the ground. We aimed to understand whether zoo-housed apes’ use of elevated spaces for retiring similarly differed between species and across exhibits...

Inoue, N., Shimada, M. 2020. Comparisons of activity budgets, interactions, and social structures in captive and wild chimpanzees (Pan troglodytes). Animals 10(6), 1063.

Chimpanzees in zoos with sufficient and appropriate environmental enrichment devices are expected to exhibit behaviors, interactions, and societies similar to those in the wild. In this study, we compared the activity budgets of each observed...

Turner, P. V., Pang, D. S., Lofgren, J. L. 2019. A review of pain assessment methods in laboratory rodents. Comparative Medicine 69(6), 451–467.

Ensuring that laboratory rodent pain is well managed underpins the ethical acceptability of working with these animals in research. Appropriate treatment of pain in laboratory rodents requires accurate assessments of the presence or absence of...

Hempstead, M. N., Lindquist, T. M., Shearer, J. K. et al. 2020. Acute cortisol and behavior of dairy goat kids administered local anesthesia, topical anesthesia or systemic analgesia prior to cautery disbudding. Physiology & Behavior 222, 112942.

Cautery disbudding of goat kids causes thermal burns and tissue destruction, which results in acute and post-operative pain and negatively affects animal welfare. The objectives of this study were to evaluate acute cortisol concentrations and...

Beck, M. R., Gregorini, P. 2020. How dietary diversity enhances hedonic and eudaimonic well-being in grazing ruminants. Frontiers in Veterinary Science 7, 191.

Ruminants evolved in diverse landscapes of which they utilized, by choice, a diverse arrangement of plants (grasses, forbs, and trees) for food. These plants provide them with both primary (carbohydrates, protein, etc.) and secondary (phenolics...

Allanic, M., Hayashi, M., Matsuzawa, T., 2020. Investigating the function of mutual grooming in captive bonobos (Pan paniscus) and Chimpanzees (Pan troglodytes). Folia Primatologica 91, 481-494.

Social grooming is often exchanged between individuals in many primate species. Rates of bidirectional (or simultaneous mutual) grooming vary across primate species, and its function is not yet fully understood. For example, mutual grooming is...

Dupepe, L. M., Dauchy, R. T., McAndrew, D. et al. 2020. Eliminating light-at-night contamination during a lab animal facility renovation. Laboratory Animal Science Professional 8(5) (September/October), 60-62.

Relocating laboratory animal research from one animal facility room to another in advance of major renovations can be a daunting task for scientists and animal care personnel alike. This is especially so regarding controlled lighting...

Chapa, J. M., Maschat, K., Iwersen, M. et al. 2020. Accelerometer systems as tools for health and welfare assessment in cattle and pigs – A review. Behavioural Processes 181, 104262.

Welfare assessment has traditionally been performed by direct observation by humans, providing information at only selected points in time. Recently, this assessment method has been questioned, as ‘Precision Livestock Farming’ technologies may be able to...

Cloutier Barbour, C., Danforth, M. D., Murphy, H. et al. 2020. Monitoring great ape heart health through innovative electrocardiogram technology: Training methodologies and welfare implications. Zoo Biology 39(6), 443-447.

Assessing and treating cardiovascular disease (or heart disease) is a growing concern for institutions housing great apes, as it is a major cause of mortality in all four taxa managed in human care. As part...

Reamer, L. A., Neal Webb, S. J., Jones, R. et al. 2020. Validation and utility of a body condition scoring system for chimpanzees (Pan troglodytes). American Journal of Primatology 82(10), e23188.

Obesity is a problem in captive chimpanzee colonies that can lead to increased risk for disease; therefore, implementation of effective weight management strategies is imperative. To properly implement a weight management program, captive managers should...

Yamanashi, Y., Bando, H., Matsunaga, M. et al. 2020. Development of bed-building behaviors in captive chimpanzees (Pan troglodytes): Implication for critical period hypothesis and captive management. Primates 61(5), 639-646.

Wild great apes build beds for sleeping by combining tree branches or other vegetation, but the development of this behavior is poorly understood. We investigated the development of bed-building behaviors by conducting complementary cross-sectional and...

Frahm, S., Di Giminiani, P., Stanitznig, A. et al. 2020. Nociceptive threshold of calves and goat kids undergoing injection of clove oil or isoeugenol for disbudding. Animals 10(7), 1228.

In this preliminary study, we compared changes in mechanical nociceptive thresholds (MNT) of calves and goat kids injected with clove oil or isoeugenol under the horn bud as a potential, more welfare-friendly alternative to hot-iron...

Rault, J.-L., Waiblinger, S., Boivin, X. et al. 2020. The power of a positive human–animal relationship for animal welfare. Frontiers in Veterinary Science 7, 590867.

Domestic animals often seek and enjoy interacting with humans. Positive human–animal relationships can elicit positive emotions and other positive welfare outcomes. Nevertheless, our understanding of the underlying processes that govern the positive perception of humans...

Miretti, S., Lecchi, C., Ceciliani, F. et al. 2020. MicroRNAs as biomarkers for animal health and welfare in livestock. Frontiers in Veterinary Science 7, 578193.

MicroRNAs (miRNAs) are small and highly conserved non-coding RNA molecules that orchestrate a wide range of biological processes through the post-transcriptional regulation of gene expression. An intriguing aspect in identifying these molecules as biomarkers is...

Harper, S. B., Bayne, K., Anderson, K. E. 2020. High-containment agriculture animal research: An AAALAC International perspective. ILAR Journal 61(1), 10-17.

Institutions that conduct high-containment agricultural research involving domestic livestock represent a specialized category of programs that are accredited by AAALAC International. The accreditation process includes a comprehensive assessment of the overall program of animal care...

Rojas, D., Broom, D. M., Orihuela, A. et al. 2020. Effects of human-animal relationship on animal productivity and welfare. Journal of Animal Behaviour and Biometeorology 8(3), 196-205.

This is a literature review of the effects of humans' relationships with farm animals on animal productivity and welfare, including the following topics: definition of the concept and description of different tests that have been...

Boesch, C. 2020. Mothers, environment, and ontogeny affect cognition. Animal Behavior and Cognition 7(3), 474–489.

The book “Folk Physics for Apes” remains a fascinating book about the way one captive peer-group of chimpanzees understand the world in which they grew. However, the very special living conditions these seven individuals faced...

Nawroth, C., Gygax, L. 2020. The legislative, ethical, and conceptual importance of replicability in farm animal welfare science. agriRxiv 2020, 20203211980.

In this commentary, we discuss three replicability issues that are specifically relevant to research regarding farm animal welfare: (1) Legislative action, and its potential economic consequences, should derive from robust and replicable research to benefit...

Butler, J. L., Kennerley, S. W. 2019. Mymou: A low-cost, wireless touchscreen system for automated training of nonhuman primates. Behaviour Research Methods 51, 2559–2572.

Training nonhuman primates (NHPs) to perform cognitive tasks is essential for many neuroscientific investigations, yet laboratory training is a time-consuming process with inherent limitations. Habituating NHPs to the laboratory staff and experimental equipment can take...

Webb, S. J. N., Hau, J., Schapiro, S. J. 2019. Does group size matter? Captive chimpanzee (Pan troglodytes) behavior as a function of group size and composition. American Journal of Primatology 81(1), e22947.

The National Institutes of Health and the Association of Zoos and Aquariums recommend that captive chimpanzees be housed in multi‐male, multi‐female, age‐diverse groups of no less than seven individuals. These recommendations are rooted in the...

Neal Webb, S. J., Hau, J., Schapiro, S. J. et al. 2019. Relationships between captive chimpanzee (Pan troglodytes) welfare and voluntary participation in behavioural studies. Applied Animal Behaviour Science 214, 102-109.

Voluntary participation in behavioural studies offers several scientific, management, and welfare benefits to non-human primates (NHPs). Aside from the scientific benefit of increased understanding of NHP cognition, sociality, and behaviour derived from noninvasive behavioural studies...

Howell, C. P., Cheyne, S. M. 2019. Complexities of using wild versus captive activity budget comparisons for assessing captive primate welfare. Journal of Applied Animal Welfare Science 22(1), 78-96.

Activity budget comparisons between groups or individuals in the wild and those in captivity are commonly used to determine the range of wild-type behaviors that nonhuman animals in captivity perform. These comparisons are conducted with...