Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Drewnowska, O., Lisowska, B., Turek, B. 2019. What do we know about the use of EEG monitoring during equine anesthesia: A review. Applied Sciences 9(18), 3678.

Electroencephalography is a noninvasive method used for the measurement of central nervous system bioelectrical activity. Besides its use for neurological disorders diagnostics in humans and animals, it was found to be useful as a part...

Skelton, C. J. A., Stannard, H. J. 2018. Preliminary investigation of social interactions and feeding behavior in captive group-housed Tasmanian devils (Sarcophilus Harrisii). Journal of Applied Animal Welfare Science 21(3), 295-303.

As the number of Tasmanian devils (Sarcophilus harrisii) in captivity increases, an understanding of captive social dynamics and behavior is becoming increasingly important. In the wild, devils are solitary, although sometimes, they congregate to feed...

Bacon, H. 2018. Behaviour-based husbandry—A holistic approach to the management of abnormal repetitive behaviors. Animals 8(7), 103.

The field of zoo animal welfare science has developed significantly over recent years. However despite this progress in terms of scientific research, globally, zoo animals still face many welfare challenges. Recently, animal welfare frameworks such...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Salas, M., Manteca, X., Abáigar, T. et al. 2018. Using farm animal welfare protocols as a base to assess the welfare of wild animals in captivity—case study: Dorcas gazelles (Gazella dorcas). Animals 8(7), 111.

There is a lack of protocols specifically developed for the assessment of welfare of wild animals in captivity, even when it is known that providing good standards of welfare is important. The aim of this...

Phillips, K.A., Tukan, A. N., Rigodanzo, A. D. et al. 2018. Quantification of hair cortisol concentration in common marmosets (Callithrix jacchus) and tufted capuchins (Cebus apella). American Journal of Primatology 80(7), e22879.

Quantifying cortisol concentration in hair is a non‐invasive biomarker of long‐term hypothalamic‐pituitary‐adrenal (HPA) activation, and thus can provide important information on laboratory animal health. Marmosets (Callithrix jacchus) and capuchins (Cebus apella) are New World primates...

Chotard, H., Ioannou, S., Davila-Ross, M. 2018. Infrared thermal imaging: Positive and negative emotions modify the skin temperatures of monkey and ape faces. American Journal of Primatology 80(5), e22863.

Facial thermography has enabled researchers to noninvasively and continuously measure the changes of a range of emotional states in humans. The present work used this novel technology to study the effect of positive and negative...

Coke, C., Skoumbourdis, E., Rodgers, J. C. et al. 2018. Blunting/cutting canines of adult male monkeys: A discussion by the Laboratory Animal Refinement & Enrichment Forum. Animal Technology & Welfare 17(2), 105-107.

"When you keep adult Rhesus macaque (Macaca mulatta) males, adult Cynomolgus (Macaca fascicularis) males or adult Vervet males (Chlorocebus pygerythrus), in the same enclosure, is it advisable to have the canines of the males blunted...

Lutz, C. K. 2018. A cross-species comparison of abnormal behavior in three species of singly-housed old world monkeys. Applied Animal Behaviour Science 199, 52-58.

Abnormal behavior occurs in a number of captive nonhuman primate species and is often used as an indicator of welfare. However, reported levels of abnormal behavior often vary across species, making general welfare judgments difficult...

Koistinen, T., Raatikainen, S., Sepponen, J. et al. 2018. Resting preferences and welfare of Finnraccoon (Nyctereutes procyonoides ussuriensis) females housed in various housing conditions in winter. Applied Animal Behaviour Science 207, 129-137.

Raccoon dog (Nyctereutes procyonoides ussuriensis) is the only canid species using facultative passive wintering strategy. The aim of the present study is to document the behaviour and welfare of the farmed variant of the species...

Tennant, K. S., Segura, V. D., Morris, M. C. et al. 2018. Achieving optimal welfare for the Nile hippopotamus (Hippopotamus amphibius) in North American zoos and aquariums. Behavioural Processes 156, 51-57.

Compared to other megafauna managed in zoos and aquariums, the current state of welfare for the Nile hippopotamus (Hippopotamus amphibius) is poorly understood. Complex behavior and physiological characteristics make hippos a difficult species to manage...

Perdue, B. M., Beran, M. J., Washburn, D. A. 2018. A computerized testing system for primates: Cognition, welfare, and the Rumbaughx. Behavioural Processes 156, 37-50.

Innovations in apparatus technology come about for a variety of reasons such as the need to use the same methodology with various species, the opportunity to present dynamic and carefully controlled stimuli, the goal of...

Heyworth, C., Olivo, D. 2018. Environmental and psychological enrichment for NHPs reimagined and repurposed. Laboratory Animal Science Professional 5(4) (December), 39-43.

This article describes creative enrichment ideas for nonhuman primates, including celery stalks embedded with seeds; paper rolled into tubes, braided and filled with fruit and seeds; pineapple crowns loaded with treats; dry spaghetti noodles coated...

Freling, S. 2018. Learning about tree shrews. Laboratory Animal Science Professional 5(4) (December), 14-17.

This article describes the natural behaviors of tree shrews and how to accommodate for their care and welfare in a laboratory, including information on infant rearing and diet, caging, environmental enrichment, and mitigation of stressors.

Unakafov, A. M., Möller, S., Kagan, I. et al. 2018. Using imaging photoplethysmography for heart rate estimation in non-human primates. PLOS ONE 13(8), e0202581.

For humans and for non-human primates heart rate is a reliable indicator of an individual’s current physiological state, with applications ranging from health checks to experimental studies of cognitive and emotional state. In humans, changes...

Liu, H., Duan H., Wang C. 2017. Effects of ambient environmental factors on the stereotypic behaviors of giant pandas (Ailuropoda melanoleuca). PLOS ONE 12(1), e0170167.

Stereotypies are commonly observed in zoo animals, and it is necessary to better understand whether ambient environmental factors contribute to stereotypy and how to affect animal welfare in zoo settings. This study investigated the relationships...

Troxell-Smith, S. M., Whelan, C. J., Magle, S. B. et al. 2017. Zoo foraging ecology: Development and assessment of a welfare tool for captive animals. Animal Welfare 26(3), 265-275.

Foraging ecology and food patch studies are commonly used to elucidate the environmental perceptions of wild, free-ranging animals. Their application to captive animals, however, especially those in zoos, is still in its infancy. To illustrate...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Barnett, G. J., Barnett, I. J., Wilson, S. R. 2017. Comparison of 6 injectable anesthetic regimens and isoflurane in gray short-tailed opossums (Monodelphis domestica). JAALAS 56(5), 544-549.

Gray short-tailed opossums are used in a wide variety of research in the areas of developmental biology, oncology, immunology, and comparative biology. Despite many frequent experimental manipulations of these animals under anesthesia, few studies to...

Martin, A. L. 2017. Theprimatologist as a behavioral engineer. American Journal of Primatology 79, e22500.

The field of primate behavior management has had only limited success in preventing and treating abnormal behaviors, such as stereotypy and self‐injury, in captive non‐human primates (NHP). In contrast, applied behavior analysts have had great...

Palmer, S. 2017. Rescue-Enrich-Release: The environmental enrichment program for three species of captive primates at Colobus. Canopy 17(2), 27-30.

It is widely known that the psychological wellbeing of captive animals can become compromised by a captive environment that lacks proper environmental stimulation. Environmental enrichment programs have become the norm in captive environments yet research...

Alligood, C. A., Dorey, N. R., Mehrkam, L. R. et al. 2017. Applying behavior-analytic methodology to the science and practice of environmental enrichment in zoos and aquariums. Zoo Biology 36(3), 175–185.

Environmental enrichment in zoos and aquariums is often evaluated at two overlapping levels: published research and day‐to‐day institutional record keeping. Several authors have discussed ongoing challenges with small sample sizes in between‐groups zoological research and...

Carlson, A., Allen, C., Skoumbourdis, E. et al. 2017. Cooked food for non-human primates: A discussion by the Laboratory Animal Refinement & Enrichment Forum. Animal Technology and Welfare 16(2), 124-126.

"Do any of you give cooked food like pasta, potatoes or vegetables to non-human primates? What’s your experience? Do the animals benefit from cooked food; do they like it; does it affect their health in...

Coleman, K., Novak, M. A. 2017. Environmental enrichment in the 21st century. ILAR Journal 58(2), 295-307.

More than a quarter of a century has elapsed since the Animal Welfare Act mandated that research facilities develop and follow a plan to promote the psychological well-being of captive primates. Since passage of this...