Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Beamish, G., Chapman, C., Lomax, A. 2018. Design by intravenous injection in the Syrian hamster. Animal Technology and Welfare 17(2), 124-125.

Repeated injections in rats and mice are typically done via the tail vein. For hamsters, the tail is not an option. In this paper we explore the development and refinement of IV dosing in the...

MacRae, A. M., Makowska, I. J., Fraser, D. 2018. Initial evaluation of facial expressions and behaviours of harbour seal pups (Phoca vitulina) in response to tagging and microchipping. Applied Animal Behaviour Science 205, 167-174.

There are no proven species-specific indicators of pain in harbour seals (Phoca vitulina). The analysis of facial expressions has proven to be a repeatable, accurate and valid method of identifying pain in multiple species, but...

Brando, S., Broom, D. M., Acasuso-Rivero, C. et al. 2018. Optimal marine mammal welfare under human care: Current efforts and future directions. Behavioural Processes 156, 16-36.

Marine mammals include cetaceans, pinnipeds, sirenians, sea otters and polar bears, many of which are charismatic and popular species commonly kept under human care in zoos and aquaria. However, in comparison with their fully terrestrial...

Iske, C. J., Morris, C. L., Colpoys, J. D. et al. 2018. Nutrient evaluation of a pork by-product and its use as environmental enrichment for managed large exotic cats. PLOS ONE 13(9), e0202144.

North American zoological institutions typically feed ground raw meat diets to large exotic cats. These diets typically are nutritionally complete, but lack physical properties characteristic of whole prey. Lack of mastication and prey manipulation may...

Norton, B. B., Tunseth, D., Holder, K. et al. 2018. Causes of morbidity in captive African lions (Panthera leo) in North America, 2001–2016. Zoo Biology 37(5), 354-359.

The lion (Panthera leo) is an iconic resident of zoos and wild animal parks throughout the world. Regular assessment of the morbidity of captive lions is necessary to address wellness concerns and improve the healthcare...

Vaz, J., Narayan, E. J., Dileep Kumar, R. et al. 2017. Prevalence and determinants of stereotypic behaviours and physiological stress among tigers and leopards in Indian zoos. PLOS ONE 12(4), e0174711.

India’s charismatic wildlife species are facing immense pressure from anthropogenic-induced environmental perturbations. Zoos play a major role in the conservation of threatened species, but their adaptation in captivity is posing a major challenge globally. Stress...

Rodrigues, M. V., de Castro, S. O., de Albuquerque, C. Z. 2017. The gingival vein as a minimally traumatic site for multiple blood sampling in guinea pigs and hamsters. PLOS ONE 12(5), e0177967.

Laboratory animals are still necessary in scientific investigation and vaccine testing, but while novel methodological approaches are not available for their replacement, the search for new, humane, easy, and painless methods is necessary to diminish...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Samuelson, M. M., Lauderdale, L. K., Pulis, K. et al. 2017. Olfactory enrichment in California sea lions (Zalophus californianus): An effective tool for captive welfare? Journal of Applied Animal Welfare Science 20(1), 75-85.

In the wild, California sea lions (Zalophus californianus) are exposed to a wide variety of sensory information, which cannot be replicated in captive environments. Therefore, unique procedures are necessary for maintaining physiological and psychological health...

Ross, A. P., Norvelle, A., Choi, D. C. et al. 2017. Social housing and social isolation: Impact on stress indices and energy balance in male and female Syrian hamsters (Mesocricetus auratus). Physiology & Behavior 177, 264-269.

Although Syrian hamsters are thought to be naturally solitary, recent evidence from our laboratory demonstrates that hamsters may actually prefer social contact. Hamsters increase their preference for a location associated with an agonistic encounter regardless...

Alligood, C. A., Dorey, N. R., Mehrkam, L. R. et al. 2017. Applying behavior-analytic methodology to the science and practice of environmental enrichment in zoos and aquariums. Zoo Biology 36(3), 175–185.

Environmental enrichment in zoos and aquariums is often evaluated at two overlapping levels: published research and day‐to‐day institutional record keeping. Several authors have discussed ongoing challenges with small sample sizes in between‐groups zoological research and...

Damasceno, J., Genaro, G., Quirke, T. et al. 2017. The effects of intrinsic enrichment on captive felids. Zoo Biology 36(3), 186–192.

Environmental enrichment is a well‐known technique, which has been used to enhance the welfare of captive animals. The aim of this study is to investigate how three different forms of intrinsic enrichment, namely, a hay...

Rose, P. E., Nash, S. M., Riley, L. M. 2017. To pace or not to pace? A review of what abnormal repetitive behavior tells us about zoo animal management. Journal of Veterinary Behavior 20, 11-21.

Performance of abnormal repetitive behavior (ARB) is noted in many captive wild species. ARB can be categorized into 2 basic forms: those whose aim appears to be to compulsively reach an inappropriate goal and those...

Phillips, C. J. C., Tribe, A., Lisle, A. et al. 2017. Keepers' rating of emotions in captive big cats, and their use in determining responses to different types of enrichment. Journal of Veterinary Behavior 20, 22-30.

Effective identification of emotional states in captive big cats by keepers is important for them to be able to reduce the risks of abnormal behavior by providing appropriate enrichment strategies. In an initial study, 29...

Slaney, H. 2017. Using domestic animals as tiger enrichment. RATEL (Journal of the Association of British and Irish Wild Animal Keepers) 44(2), 24-27.

At Colchester Zoo we have a well established but evolving enrichment program, using many different ideas and techniques for our many different species. One form of enrichment we use is the presence of our domestic...

Miller, L. J., Pisacane, C. B., Vicino, G. A. 2016. Relationship between behavioural diversity and faecal glucocorticoid metabolites: a case study with cheetahs (Acinonyx jubatus). Animal Welfare 25(3), 325-329.

The ability to monitor the welfare of animal collections in zoological institutions is critical to the mission of these facilities. Historically, zoos have utilised negative indicators of welfare, such as stereotypic behaviour to examine and...

Gartner, M. C., Powell, D. M., Weiss, A. 2016. Comparison of subjective well-being and personality assessments in the clouded leopard (Neofelis nebulosa), snow leopard (Panthera uncia), and African lion (Panthera leo). Journal of Applied Animal Welfare Science 19(3), 294-302.

The study of subjective well-being in nonhuman animals is growing in the field of psychology, but there are still only a few published studies and the focus is on primates. To consider whether the construct...

Winnicker, C., Gaskill, B., Garner, J. P. et al. 2016. A Guide to the Behavior & Enrichment of Laboratory Rodents. Charles River Laboratories.

Covering species-typical behavior as well as abnormal/malfunctional behavior and stereotypes observed in mice, rats, hamsters and gerbils, this is an excellent resource for those looking to implement or enhance an existing behavioral husbandry and enrichment...

Razal, C., Pisacane, C., Miller, L. 2016. Multifaceted approach to personality assessment in cheetahs (Acinonyx jubatus). Animal Behavior and Cognition 3(1), 22–31.

The purpose of this study was to assess the personality of 17 South African cheetahs at the San Diego Zoo Safari Park. A multifaceted approach of observer ratings (rating method), behavioral data (coding method) and...

Pritchett-Corning, K. R., Gaskill, B. N. 2015. Lack of negative effects on Syrian hamsters and Mongolian gerbils housed in the same secondary enclosure. JAALAS 54(3), 261-266.

In cases where different species might be housed in the same room or secondary enclosure, the Guide for the Care and Use of Laboratory Animals recommends that the animals should be behaviorally compatible and have...

Bayne, K. A., Beaver, B. V., Mench, J. A. et al. 2015. Laboratory animal behavior. In: Laboratory Animal Medicine, 3rd edition. Fox, J. G., Anderson, L., Otto, G., et al. (eds). Elsevier, Inc., Amsterdam, NL. pp. 1617-1651.

The study of laboratory animal behavior has increased steadily over the last decade, with expanding emphasis on a variety of commonly used species. In the United States, this trend was initially focused on species for...

Bethell, E. J., Koyama, N. F. 2015. Happy hamsters? Enrichment induces positive judgement bias for mildly (but not truly) ambiguous cues to reward and punishment in Mesocricetus auratus. Royal Society Open Science 2, 140399.

Recent developments in the study of animal cognition and emotion have resulted in the ‘judgement bias’ model of animal welfare. Judgement biases describe the way in which changes in affective state are characterized by changes...

Bode, A. E., Barber, H. 2014. Use of vinyl nonadhesive tape as an alternative for positioning rodents in small animal imaging. American Association for Laboratory Animal Science [AALAS] Meeting Official Program, 597-598. (Abstract #P185).

Specific positioning for different imaging modalities is essential in our small animal imaging core. While we have different animal holders designed to position the animal inside the MRI, additional securing of the animal to the...