Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Chatigny, F., Creighton, C. M., Stevens, E. D. 2018. Updated review of fish analgesia. JAALAS 57(1), 5-12.

Analgesics are an integral part of routine pain management in mammals, yet their use in fish is still limited. Some recommendations on the use of analgesics in fish are currently in the literature; however, information...

Chatigny, F., Creighton, C. M., Stevens, E. D. 2018. Intramuscular infiltration of a local anesthetic, lidocaine, does not result in adverse behavioural side effects in rainbow trout. Scientific Reports 8, 10250.

Fish are a useful animal model for research, but our improvement in some aspects of their welfare has not kept pace with their increased popularity for this use. For example, researchers rarely use analgesics. We...

Clegg, I. L. K., Delfour, F. 2018. Cognitive judgement bias is associated with frequency of anticipatory behavior in bottlenose dolphins. Zoo Biology 37(2), 67–73.

Many animals display a suite of increased vigilance and/or activity responses in relation to upcoming events, termed “anticipatory behavior.” Anticipatory behavior toward positive events has been suggested as a cross‐species measure of affective state as...

Pounder, K. C., Mitchell, J. L., Thomson, J. S. et al. 2018. Physiological and behavioural evaluation of common anaesthesia practices in the rainbow trout. Applied Animal Behaviour Science 199, 94-102.

Anaesthetic drugs are commonly administered to fish in aquaculture, research and veterinary contexts. Anaesthesia causes temporary absence of consciousness and may reduce the stress and/or pain associated with handling and certain invasive procedures. The rainbow...

Clegg, I. L. K., Rödel, H. G., Boivin, X. 2018. Looking forward to interacting with their caretakers: dolphins’ anticipatory behaviour indicates motivation to participate in specific events. Applied Animal Behaviour Science 202, 85-93.

Anticipatory behaviour describes the actions taken to prepare for an upcoming event. Bottlenose dolphins (Tursiops truncatus) in captivity are known to display anticipatory behaviours before feeding sessions, but it is unknown whether they would anticipate...

Brando, S., Broom, D. M., Acasuso-Rivero, C. et al. 2018. Optimal marine mammal welfare under human care: Current efforts and future directions. Behavioural Processes 156, 16-36.

Marine mammals include cetaceans, pinnipeds, sirenians, sea otters and polar bears, many of which are charismatic and popular species commonly kept under human care in zoos and aquaria. However, in comparison with their fully terrestrial...

Cappiello, B. M., Hill, H. M., Bolton, T. T. 2018. Solitary, observer, parallel, and social object play in the bottlenose dolphin (Tursiops truncatus). Behavioural Processes 157, 453-458.

Many comparative studies have focused on the emergence of solitary and social play in early development, however, few consider observer and parallel forms of play. In this study, we analyzed approximately 21 h of video recordings...

O’Rourke, D. P., Baccanale, C. L., Stoskopf, M. K. 2018. Nontraditional laboratory animal species (cephalopods, fish, amphibians, reptiles, and birds). ILAR Journal 59(2), 168-176.

Aquatic vertebrates and cephalopods, amphibians, reptiles, and birds offer unique safety and occupational health challenges for laboratory animal personnel. This paper discusses environmental, handling, and zoonotic concerns associated with these species.

Chatigny, F., Groman, D. B., Martinson, S. A. et al. 2018. Evaluation of tissue changes following intramuscular infiltration of lidocaine in rainbow trout Oncorhynchus mykiss. Journal of Fish Biology 92(4), 888-900.

Rainbow trout Oncorhynchus mykiss were infiltrated with either saline or lidocaine adjacent to the dorsal fin to assess histopathological changes. Infiltration was done as if it were being used as a local anaesthetic. Tissue lesions...

Fenkes, M., Shiels, H. A., Nudds, R. L. 2018. Body shape and robustness response to water flow during development of brown trout Salmo trutta parr. Journal of Fish Biology 93(2), 360-369.

Domesticated brown trout Salmo trutta parr were subjected to increased, variable flow under controlled experimental conditions. Using geometric morphometric analyses, (a mass:length index) and caudal fin area:body length ratio, this study assessed morphological responses in...

Self, K. E., Schreck, C. B., Cogliati, K. M. et al. 2018. The effect of rearing structures on behaviour and movement of juvenile steelhead Oncorhynchus mykiss. Journal of Fish Biology 93(3), 449-454.

The relative movement of juvenile steelhead Oncorhynchus mykiss reared on two treatments was investigated to provide insight on the effect of structure in the rearing environment on the behaviour of the fish before potential release...

Rachinas-Lopes, P., Ribeiro, R., dos Santos, M. E. et al. 2018. D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins. PLOS ONE 13(8), e0201614.

Scoring and tracking animal movements manually is a time consuming and subjective process, susceptible to errors due to fatigue. Automated and semi-automated video-based tracking methods have been developed to overcome the errors and biases of...

Green, T. J., Wolfenden, D. C. C., Sneddon, L. U. 2018. An investigation on the impact of substrate type, temperature, and iodine on moon jellyfish production. Zoo Biology 37(6), 434-439.

Jellyfish are a popular public aquarium species, however, their collection from natural populations is undesirable due to impact on species abundance and bycatch. Thus, a sustainable supply of jellyfish bred in-house would be highly desirable...

Clegg, I. L. K., van Elk, C. E., Delfour, F. 2017. Applying welfare science to bottlenose dolphins (Tursiops truncatus). Animal Welfare 26(2), 165-176.

Animal welfare science is a burgeoning field, but research on cetaceans (whales, dolphins and porpoises) is lacking. Bottlenose dolphins (Tursiops truncatus) are the most well-known and studied cetaceans, particularly in captivity, and thus are used...

Monreal-Pawlowsky, T., Carbajal, A., Tallo-Parra, O. et al. 2017. Daily salivary cortisol levels in response to stress factors in captive common bottlenose dolphins (Tursiops truncatus): A potential welfare indicator. Veterinary Record 180(24), 593.

Dolphins in a captive setting can be occasionally subjected to a variety of potentially stressful situations. The stress response comprises a variety of biological reactions to internal or external stimuli elicited when an individual perceives...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Chatigny, F., Kamunde, C., Creighton, C. M. et al. 2017. Uses and doses of local anesthetics in fish, amphibians, and reptiles. JAALAS 56(3), 244-253.

Local anesthetics are an integral part of routine pain management in mammals, yet their use is relatively limited in fish, amphibians and reptiles. These animals frequently undergo potentially painful surgical procedures and therefore could possibly...

Alligood, C. A., Dorey, N. R., Mehrkam, L. R. et al. 2017. Applying behavior-analytic methodology to the science and practice of environmental enrichment in zoos and aquariums. Zoo Biology 36(3), 175–185.

Environmental enrichment in zoos and aquariums is often evaluated at two overlapping levels: published research and day‐to‐day institutional record keeping. Several authors have discussed ongoing challenges with small sample sizes in between‐groups zoological research and...

Harvey, B. S., Dudzinski, K. M., Kuczaj, S. A. 2017. Associations and the role of affiliative, agonistic, and socio-sexual behaviors among common bottlenose dolphins (Tursiops truncatus). Behavioural Processes 135, 145-156.

Little is known about the specific behavioral exchanges that occur on a day-to-day basis between dyads of common bottlenose dolphins (Tursiops truncatus). This study assesses the proportion of time dyads spend in proximity (within ∼2...

Clegg, I. L., Rödel, H. G., Delfour, F. 2017. Bottlenose dolphins engaging in more social affiliative behaviour judge ambiguous cues more optimistically. Behavioural Brain Research 322, 115-122.

Cognitive bias tests measure variation in emotional appraisal and are validated methods to assess animals’ affective states. However, the link between social behaviours and cognitive bias has not yet been investigated. Bottlenose dolphins are a...

Burton, D., Burton, M. (Eds). 2017. Essential Fish Biology: Diversity, Structure and Function. Oxford University Press: Oxford, U.K., 448 pp.

This book summarizes the basic features of living fish. It is introduced by a chapter on the diversity of a group which has over 30,000 species, the largest within the vertebrates, describing the classification systems...

Rose, P. E., Nash, S. M., Riley, L. M. 2017. To pace or not to pace? A review of what abnormal repetitive behavior tells us about zoo animal management. Journal of Veterinary Behavior 20, 11-21.

Performance of abnormal repetitive behavior (ARB) is noted in many captive wild species. ARB can be categorized into 2 basic forms: those whose aim appears to be to compulsively reach an inappropriate goal and those...

Cooke, G. M. 2017. Stereotypic behavior is not limited to terrestrial taxa: A response to Rose et al. Journal of Veterinary Behavior 22, 17-18.

This comment is in response to a recent review of stereotypical behavior in captive exotic animals (Rose et al., 2017). Negative stereotypical behavior occurs across most if not all taxa, including notable aquatic invertebrates. A...

Bermejo-Poza, R., De la Fuente, J., Pérez, C. 2016. Reducing the effect of pre-slaughter fasting on the stress response of rainbow trout (Oncorhynchus mykiss). Animal Welfare 25(3), 339-346.

Fasting is commonly used in aquaculture to empty the gut before slaughter, but little is known about how feeding frequency before fasting affects the stress response of trout. To find out more, 240 rainbow trout...

Brown, C. 2015. Fish intelligence, sentience and ethics. Animal Cognition 18(1), 1-17.

Fish are one of the most highly utilised vertebrate taxa by humans; they are harvested from wild stocks as part of global fishing industries, grown under intensive aquaculture conditions, are the most common pet and...