Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Llaniguez, J. T., Szczepaniak, M. A., Rickman, B. H. et al. 2020. Quantitative and qualitative behavioral measurements to assess pain in axolotls (Ambystoma mexicanum). JAALAS 59(2), 186–196.

Effective pain relief in animals relies on the ability to discern pain and assess its severity. However, few objective measures exist to assess the presence and severity of pain in axolotls, and few resources are...

Miller, L. J., Vicino, G. A., Sheftel, J. et al. 2020. Behavioral diversity as a potential indicator of positive animal welfare. Animals 10(7), 1211.

Modern day zoos and aquariums continuously assess the welfare of their animals and use evidence to make informed management decisions. Historically, many of the indicators of animal welfare used to assess the collection are negative...

Moreira, A., McLaren, B. 2019. Monitoring the effects of feeding in groups: Behavioural trials in farmed elk in winter. Applied Animal Behaviour Science 212, 66-73.

We studied the effect of managing group size in domesticated elk in the context of social foraging theory, and toward recommendations for livestock well-being and efficient use of common pastures. We compared foraging in adult...

Sherwen, S. L., Hemsworth, P. H. The visitor effect on zoo animals: Implications and opportunities for zoo animal welfare. Animals 9(6), 366.

Achieving and maintaining high standards of animal welfare is critical to the success of a modern zoo. Research has shown that an animal's welfare is highly dependent on how various individual animal factors (e.g., species...

Janiszewski, P., Cilulko-Dolega, J. 2019. Behavior and spatial use of enclosures by does and fawns of farmed fallow deer in postnatal period. Journal of Veterinary Behavior 31, 5-9.

The aim of this study was to determine the hiding preferences of farmed European fallow deer does and fawns in natural sites and artificial shelters during the postnatal period. A total of 270 hours of...

Weber, L., Šmejkal, M., Bartoň, D. et al. 2019. Testing the applicability of tagging the Great crested newt (Triturus cristatus) using passive integrated transponders. PLOS ONE 14(7), e0219069.

Tracking individual animals with small-sized passive integrated transponder tags (PIT tags) has become a popular and widespread method, one which can be used for investigating life history traits, including dispersal patterns of small protected animals...

DeNicola, A. J., Miller, D. S., DeNicola, V. L. et al. 2019. Assessment of humaneness using gunshot targeting the brain and cervical spine for cervid depopulation under field conditions. PLOS ONE 14(2), e0213200.

Population reduction or eradication of domestic or non-domestic species may be required to address their impacts on the environment, other species, or human interests. Firearms are often used to accomplish these practical management objectives, and...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Fischer, C. P., Romero, L. M. 2019. Chronic captivity stress in wild animals is highly species-specific. Conservation Physiology 7(1), coz093.

Wild animals are brought into captivity for many reasons—conservation, research, agriculture and the exotic pet trade. While the physical needs of animals are met in captivity, the conditions of confinement and exposure to humans can...

Bacon, H. 2018. Behaviour-based husbandry—A holistic approach to the management of abnormal repetitive behaviors. Animals 8(7), 103.

The field of zoo animal welfare science has developed significantly over recent years. However despite this progress in terms of scientific research, globally, zoo animals still face many welfare challenges. Recently, animal welfare frameworks such...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...

Wolfensohn, S., Shotton, J., Bowley, H. et al. 2018. Assessment of welfare in zoo animals: Towards optimum quality of life. Animals 8(7), 110.

Zoos are required to maintain a high standard of animal welfare, and this can be assessed using a combination of resource-based and animal-based indices usually divided into behavioural indicators, physiological indicators and clinical/pathological signs. Modern...

Salas, M., Manteca, X., Abáigar, T. et al. 2018. Using farm animal welfare protocols as a base to assess the welfare of wild animals in captivity—case study: Dorcas gazelles (Gazella dorcas). Animals 8(7), 111.

There is a lack of protocols specifically developed for the assessment of welfare of wild animals in captivity, even when it is known that providing good standards of welfare is important. The aim of this...

O’Rourke, D. P., Baccanale, C. L., Stoskopf, M. K. 2018. Nontraditional laboratory animal species (cephalopods, fish, amphibians, reptiles, and birds). ILAR Journal 59(2), 168-176.

Aquatic vertebrates and cephalopods, amphibians, reptiles, and birds offer unique safety and occupational health challenges for laboratory animal personnel. This paper discusses environmental, handling, and zoonotic concerns associated with these species.

Pasmans, F., Bogaerts, S., Braeckman, J. et al. 2017. Future of keeping pet reptiles and amphibians: Towards integrating animal welfare, human health and environmental sustainability. Veterinary Record 181(17), 450.

The keeping of exotic pets is currently under debate and governments of several countries are increasingly exploring the regulation, or even the banning, of exotic pet keeping. Major concerns are issues of public health and...

Krebs, B. L., Torres, E., Chesney, C. et al. 2017. Applying behavioral conditioning to identify anticipatory behaviors. Journal of Applied Animal Welfare Science 20(2), 155-175.

The ability to predict regular events can be adaptive for nonhuman animals living in an otherwise unpredictable environment. Animals may exhibit behavioral changes preceding a predictable event; such changes reflect anticipatory behavior. Anticipatory behavior is...

Chatigny, F., Kamunde, C., Creighton, C. M. et al. 2017. Uses and doses of local anesthetics in fish, amphibians, and reptiles. JAALAS 56(3), 244-253.

Local anesthetics are an integral part of routine pain management in mammals, yet their use is relatively limited in fish, amphibians and reptiles. These animals frequently undergo potentially painful surgical procedures and therefore could possibly...

Alligood, C. A., Dorey, N. R., Mehrkam, L. R. et al. 2017. Applying behavior-analytic methodology to the science and practice of environmental enrichment in zoos and aquariums. Zoo Biology 36(3), 175–185.

Environmental enrichment in zoos and aquariums is often evaluated at two overlapping levels: published research and day‐to‐day institutional record keeping. Several authors have discussed ongoing challenges with small sample sizes in between‐groups zoological research and...

Wall, E. L., Hartley, M. 2017. Assessing enclosure design and husbandry practices for successful keeping and breeding of the Burmese brow antlered deer (Eld’s deer, Rucervus eldii thamin) in European zoos. Zoo Biology 36(3), 201–212.

The endangered Burmese brow antlered deer (Rucervus eldii thamin) is a medium sized tropical cervid kept in a number of European zoos. Studbook data and anecdotal reports have suggested that this species suffers from poor...

Billingham, E. 2017. The curious tale of axolotl enrichment. Animal Technology and Welfare 16(3), 191-194.

Axolotls can be used in scientific research to provide fertilised embryos for investigations into the genetic pathways controlling stem cell development. Breeding animals are housed for several years and environmental enrichment is required to improve...

Rose, P. E., Nash, S. M., Riley, L. M. 2017. To pace or not to pace? A review of what abnormal repetitive behavior tells us about zoo animal management. Journal of Veterinary Behavior 20, 11-21.

Performance of abnormal repetitive behavior (ARB) is noted in many captive wild species. ARB can be categorized into 2 basic forms: those whose aim appears to be to compulsively reach an inappropriate goal and those...

Baines, F. M., Chattell, J., Dale, J. et al. 2016. How much UVB does my reptile need? The UV-Tool, a guide to the selection of UV lighting for reptiles and amphibians in captivity. Journal of Zoo and Aquarium Research 4(1), 42-63.

Guidance is almost non-existent as to suitable levels of UV lighting for reptiles and amphibians, or how to achieve satisfactory UV gradients using artificial lighting. The UV-Tool is a working document that seeks to address...

Sneddon, L. U., Elwood, R. W., Adamo, S. A. et al. 2014. Defining and assessing animal pain. Animal Behaviour 97, 201-212.

The detection and assessment of pain in animals is crucial to improving their welfare in a variety of contexts in which humans are ethically or legally bound to do so. Thus clear standards to judge...

Hawkins, P. 2014. Refining housing, husbandry and care for animals used in studies involving biotelemetry. Animals 4(2), 361-373.

Biotelemetry can contribute towards reducing animal numbers and suffering in disciplines including physiology, pharmacology and behavioural research. However, the technique can also cause harm to animals, making biotelemetry a ‘refinement that needs refining’. Current welfare...

Melfi, V. 2013. Is training zoo animals enriching? Applied Animal Behaviour Science 147, 299-305.

Husbandry training of zoo animals (training) has been associated with many benefits, and indisputably is a valuable tool; training facilitates movement of animals within their environment, and participation in husbandry and medical procedures. Training has...