Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Edes, A. N., Baskir, E., Bauman, K. L. et al. 2021. Effects of crowd size, composition, and noise level on pool use in a mixed-species penguin colony. Animal Behavior and Cognition 8(4), 507–520.

Studies on how visitors affect penguins in human care report a mixture of negative, neutral, and positive impacts on behavior and physiology. Swimming is a highly motivated behavior that may promote positive welfare in penguins...

Fernandez, E. J., Myers, M., Hawkes, N. C. 2021. The effects of live feeding on swimming activity and exhibit use in zoo Humboldt penguins (Spheniscus humboldti). Journal of Zoological and Botanical Gardens 2(1), 88–100.

Penguins are considered among the most popular animals for zoo and aquarium visitors to observe. Swimming is considered a desirable activity, both for the visitor experience and the welfare of the penguins. However, little is...

Fuller, G., Hamilton, J., Allard, S. 2021. DNA damage as a potential non-invasive indicator of welfare: A preliminary study in zoo-housed grizzly bears (Ursus arctos horribilis). Journal of Zoological and Botanical Gardens 2(3), 316–334.

Measures of oxidative stress have potential for integrating positive and negative life experiences into comprehensive cellular indicators of animal welfare. We explored this possibility when three adult grizzly bear brothers at the Detroit Zoo were...

Melfi, V. A., Dorey, N. R., Ward, S. (Eds.) 2020. Zoo Animal Learning and Training. John Wiley & Sons: Hoboken, NJ, 384 pp.

Comprehensively explains animal learning theories and current best practices in animal training within zoos. This accessible, up-to-date book on animal training in a zoo/aquaria context provides a unified approach to zoo animal learning, bringing together...

Kalafut, K. L., Kinley, R. 2020. Using radio frequency identification for behavioral monitoring in little blue penguins. Journal of Applied Animal Welfare Science 23(1), 62-73.

A common goal of captive animal institutions is to create environments that allow for the most naturalistic behavior from their animals. Behavioral data is often used as a measure of how an animal is thriving...

Harvey, A., Beausoleil, N., Ramp, D. et al. 2020. A ten-stage protocol for assessing the welfare of individual non-captive wild animals: Free-roaming horses (Equus ferus caballus) as an example. Animals 10(1), 148.

Knowledge of the welfare status of wild animals is vital for informing debates about the ways in which we interact with wild animals and their habitats. Currently, there is no published information about how to...

Boers, K. L., Allender, M. C., Novak, L. J. et al. 2020. Assessment of hematologic and corticosterone response in free-living eastern box turtles (Terrapene carolina carolina) at capture and after handling. Zoo Biology 39(1), 13-22.

Hematology is a common tool for wildlife health assessments. Manual leukocyte counts are required in reptiles, however, disagreement between quantification methods has been observed in some chelonians. This study determined agreement between two methods of...

Zemanova, M. A. 2020. Towards more compassionate wildlife research through the 3Rs principles: Moving from invasive to noninvasive methods. Wildlife Biology 2020(1), no page numbers.

Research in ecology and wildlife biology remains crucial for increasing our knowledge and improving species management and conservation in the midst of the current biodiversity crisis. However, obtaining information on population status often involves invasive...

Hammond, C. 2020. Comparing the frequency of stereotypical and non-stereotypical behaviours in captive brown bears (Ursus arctos arctos) at The Wildwood Trust. RATEL (Journal of the Association of British and Irish Wild Animal Keepers) 47(1), 4-7.

Zoos play an important role in conservation, participating in captive breeding programmes and scientific research. The research can be shared and inform practice in the field and zoos. A behavioural observation study was conducted on...

Fanning, L., Larsen, H., Taylor, P. S. 2020. A preliminary study investigating the impact of musical concerts on the behavior of captive Fiordland penguins (Eudyptes pachyrhynchus) and collared peccaries (Pecari tajacu). Animals 10(11), 2035.

Captive animal welfare is important for establishments that exhibit species for education, conservation, and research. However, captive animals are often exposed to a number of potential stressors, such as visitors and anthropogenic noise. We aimed...

Miller, L. J., Vicino, G. A., Sheftel, J. et al. 2020. Behavioral diversity as a potential indicator of positive animal welfare. Animals 10(7), 1211.

Modern day zoos and aquariums continuously assess the welfare of their animals and use evidence to make informed management decisions. Historically, many of the indicators of animal welfare used to assess the collection are negative...

Fernandez, E. J., Yoakum, E., Andrews, N. 2020. Seasonal and daily activity of two zoo-housed grizzly bears (Ursus arctos horribilis). Journal of Zoological and Botanical Gardens 1(1), 1–12.

Captive grizzly bears, like their wild counterparts, engage in considerable variability in their seasonal and daily activity. We documented the year-long activity of two grizzly bears located at the Woodland Park Zoo in Seattle, Washington...

Fuller, G., Heintz, M. R., Allard, S. 2019. Validation and welfare assessment of flipper-mounted time-depth recorders for monitoring penguins in zoos and aquariums. Applied Animal Behaviour Science 212, 114-122.

The time that penguins devote to aquatic behaviors likely has important implications for their welfare in zoos and aquariums. For decades, field researchers have used time-depth recorders (TDRs) to understand the behavior of penguins at...

Eagan, T. 2019. Evaluation of enrichment for reptiles in zoos. Journal of Applied Animal Welfare Science 22(1), 69-77.

Studies on environmental enrichment for reptiles are lacking in the scientific literature. Although the literature reflects a limited take on reptile enrichment in the zoological community, it may not be the case in reality as...

Sherwen, S. L., Hemsworth, P. H. The visitor effect on zoo animals: Implications and opportunities for zoo animal welfare. Animals 9(6), 366.

Achieving and maintaining high standards of animal welfare is critical to the success of a modern zoo. Research has shown that an animal's welfare is highly dependent on how various individual animal factors (e.g., species...

Lambert, H., Carder, G., D'Cruze, N. 2019. Given the cold shoulder: A review of the scientific literature for evidence of reptile sentience. Animals 9(10), 821.

We searched a selection of the scientific literature to document evidence for, and explorations into reptile sentience. The intention of this review was to highlight; (1) to what extent reptile capability for emotions have been...

Eichner, M., Garcia, K. 2019. Increase in morbidity and mortality in a shipment of red-eared slider turtles (Trachemys scripta elegans). Laboratory Animals 53(6), 634–640.

A cohort of captive-bred red-eared slider turtles, Trachemys scripta, was received from a commercial vendor. Shortly after arrival, several turtles presented as lethargic with subjectively pale skin and multifocal areas of cotton-like tufts in the...

Egelkamp, C. L., Ross, S. R. 2019. A review of zoo-based cognitive research using touchscreen interfaces. Zoo Biology 38(2), 220-235.

In the past few decades, there has been an increase in the number of zoo-based touchscreen studies of animal cognition around the world. Such studies have contributed to the field of comparative cognition despite the...

Soriano, A. I., Vinyoles, D., Maté, C. 2019. Patterns of animal–enrichment interaction in captive brown bears. Zoo Biology 38(3), 239-247.

We studied the behavioral responses of three brown bears (Ursus arctos) to different types of enrichment devices to assess the predominant pattern of animal-enrichment interaction (PAI) to each type of enrichment. We assessed the bears'...

Van Horn, R. C., Sutherland-Smith, M., Bracho Sarcos, A. E. et al. 2019. The Andean bear alopecia syndrome may be caused by social housing. Zoo Biology 38(5), 434-441.

The Andean bear alopecia syndrome is a progressive and chronic condition documented in ex situ populations. Recent advances focus on treating symptoms, not preventing future cases. We therefore explored the epidemiology of this syndrome through...

Fernandez, E. J., Kinley, R. C., Timberlake, W. 2019. Training penguins to interact with enrichment devices for lasting effects. Zoo Biology 38(6), 481-489.

The modern zoo has brought about two major advances in the behavioral welfare of their exhibited animals: (a) The use of environmental enrichment to promote naturalistic behaviors and (b) the use of training to improve...

Cox, R. J., Nol, P., Ellis, C. K. et al. 2019. Research with agricultural animals and wildlife. ILAR Journal 60(1), 66-73.

In fiscal year 2016, agricultural animals such as swine, sheep, goats, and cattle represented 10% of the 820 812 animals used in USDA-regulated research. In addition to traditional agricultural animals, research studies using captive wildlife...

Fischer, C. P., Romero, L. M. 2019. Chronic captivity stress in wild animals is highly species-specific. Conservation Physiology 7(1), coz093.

Wild animals are brought into captivity for many reasons—conservation, research, agriculture and the exotic pet trade. While the physical needs of animals are met in captivity, the conditions of confinement and exposure to humans can...

Bacon, H. 2018. Behaviour-based husbandry—A holistic approach to the management of abnormal repetitive behaviors. Animals 8(7), 103.

The field of zoo animal welfare science has developed significantly over recent years. However despite this progress in terms of scientific research, globally, zoo animals still face many welfare challenges. Recently, animal welfare frameworks such...

Clegg, I. 2018. Cognitive bias in zoo animals: An optimistic outlook for welfare assessment. Animals 8(7), 104.

Cognitive bias testing measures how emotional states can affect cognitive processes, often described using the “glass half-full/half-empty” paradigm. Classical or operant conditioning is used to measure responses to ambiguous cues, and it has been reported...